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SDHAP1 SDHA pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 255812, updated on 10-Oct-2023

Summary

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Official Symbol
SDHAP1provided by HGNC
Official Full Name
SDHA pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:32455
See related
Ensembl:ENSG00000290763 AllianceGenome:HGNC:32455
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SDHAL1; SDHALP1
Annotation information
Note: After Build36.1, HUGO Gene Nomenclature Committee (HGNC) and NCBI noted that the annotation of SDHAL1 and SDHAL2 was incorrect. SDHAL1 is the form telomeric to SDHAL2. At that time the name of GeneID 255812 was changed to SDHAL1. [11 Apr 2007]
Expression
Ubiquitous expression in endometrium (RPKM 12.4), testis (RPKM 11.3) and 25 other tissues See more
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Genomic context

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See SDHAP1 in Genome Data Viewer
Location:
3q29
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (195959921..195990279, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (198679298..198709381, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (195686792..195717150, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195654722-195655690 Neighboring gene RNA, U2 small nuclear 11, pseudogene Neighboring gene mucin-5AC-like Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195666797-195667467 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195667468-195668137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195682291-195682942 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21064 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195694102-195694602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195694603-195695103 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:195698692-195698924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15049 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15050 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene uncharacterized LOC124909478

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNA SDHAP1 confers paclitaxel resistance of ovarian cancer by regulating EIF4G2 expression via miR-4465. Zhao H, et al. J Biochem, 2020 Aug 1. PMID 32211849
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA SDHAP1 confers paclitaxel resistance of ovarian cancer by regulating EIF4G2 expression via miR-4465.
    Title: LncRNA SDHAP1 confers paclitaxel resistance of ovarian cancer by regulating EIF4G2 expression via miR-4465.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • succinate dehydrogenase complex flavoprotein subunit A pseudogene 1
  • succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1
  • succinate dehydrogenase complex, subunit A, flavoprotein-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003264.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BC071730
    Related
    ENST00000427841.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    195959921..195990279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    198679298..198709381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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