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GOLGA2P11 GOLGA2 pseudogene 11 [ Homo sapiens (human) ]

Gene ID: 255180, updated on 10-Oct-2023

Summary

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Official Symbol
GOLGA2P11provided by HGNC
Official Full Name
GOLGA2 pseudogene 11provided by HGNC
Primary source
HGNC:HGNC:26788
See related
AllianceGenome:HGNC:26788
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.3), fat (RPKM 0.5) and 1 other tissue See more
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Genomic context

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Location:
15q22.2
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (62241721..62257703, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (60045733..60061720, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (62533920..62549902, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62457535-62458134 Neighboring gene uncharacterized LOC124903502 Neighboring gene uncharacterized LOC107984784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62534714-62535214 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62535215-62535715 Neighboring gene Sharpr-MPRA regulatory region 15238 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:62554405-62555604 Neighboring gene uncharacterized LOC102724938 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:62587380-62587893 Neighboring gene Sharpr-MPRA regulatory region 8292 Neighboring gene microRNA 8067

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • golgin A2 pseudogene 11

Clone Names

  • FLJ38723

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136885.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126323

  2. NR_169521.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC126323

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    62241721..62257703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    60045733..60061720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173805.2: Suppressed sequence

    Description
    NM_173805.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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