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TTTY22 testis expressed transcript, Y-linked 22 [ Homo sapiens (human) ]

Gene ID: 252954, updated on 10-Oct-2023

Summary

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Official Symbol
TTTY22provided by HGNC
Official Full Name
testis expressed transcript, Y-linked 22provided by HGNC
Primary source
HGNC:HGNC:18846
See related
Ensembl:ENSG00000224075 AllianceGenome:HGNC:18846
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00147
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
Yp11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (9801153..9813245)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (10109869..10111955)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (9638762..9650854)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene testis expressed transcript, Y-linked 2 Neighboring gene testis expressed transcript, Y-linked 1 Neighboring gene uncharacterized LOC107987342 Neighboring gene RNA binding motif protein Y-linked family 2 member N, pseudogene Neighboring gene testis specific protein Y-linked 18, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Copy number variation arising from gene conversion on the human Y chromosome. Shi W, et al. Hum Genet, 2018 Jan. PMID 29209947
  2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • testis-specific transcript, Y-linked 22 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001539.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AF527834
    Related
    ENST00000445253.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    9801153..9813245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    10109869..10111955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases