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Bivm basic, immunoglobulin-like variable motif containing [ Mus musculus (house mouse) ]

Gene ID: 246229, updated on 21-Apr-2024

Summary

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Official Symbol
Bivmprovided by MGI
Official Full Name
basic, immunoglobulin-like variable motif containingprovided by MGI
Primary source
MGI:MGI:2179809
See related
Ensembl:ENSMUSG00000041684 AllianceGenome:MGI:2179809
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in cytoplasm and nucleus. Orthologous to human BIVM (basic, immunoglobulin-like variable motif containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 4.7), CNS E14 (RPKM 4.5) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 C1.1; 1 23.54 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (44158032..44183931)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (44118957..44144771)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 168 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:44176158-44176267 Neighboring gene STARR-positive B cell enhancer mm9_chr1:44204561-44204862 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 5 Neighboring gene methyltransferase like 21E Neighboring gene predicted gene 15833

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BIVM, a novel gene widely distributed among deuterostomes, shares a core sequence with an unusual gene in Giardia lamblia. Yoder JA, et al. Genomics, 2002 Jun. PMID 12036287
  2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
basic immunoglobulin-like variable motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357046.1 → NP_001343975.1  basic immunoglobulin-like variable motif-containing protein

    Status: VALIDATED

    Source sequence(s)
    AC123800, BC082584, BY210554
    Consensus CDS
    CCDS14930.1
    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3

  2. NM_001357047.1 → NP_001343976.1  basic immunoglobulin-like variable motif-containing protein

    Status: VALIDATED

    Source sequence(s)
    AC123800
    Consensus CDS
    CCDS14930.1
    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3
    Related
    ENSMUSP00000041964.2, ENSMUST00000035991.8

  3. NM_001357048.1 → NP_001343977.1  basic immunoglobulin-like variable motif-containing protein

    Status: VALIDATED

    Source sequence(s)
    AC123800
    Consensus CDS
    CCDS14930.1
    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3

  4. NM_144558.4 → NP_653141.3  basic immunoglobulin-like variable motif-containing protein

    See identical proteins and their annotated locations for NP_653141.3

    Status: VALIDATED

    Source sequence(s)
    AK032375, AK034329, AK047404, CJ309003
    Consensus CDS
    CCDS14930.1
    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3
    Related
    ENSMUSP00000110357.3, ENSMUST00000114709.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    44158032..44183931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006495998.4 → XP_006496061.3  basic immunoglobulin-like variable motif-containing protein isoform X1

  2. XM_030254282.2 → XP_030110142.2  basic immunoglobulin-like variable motif-containing protein isoform X2

  3. XM_036165120.1 → XP_036021013.1  basic immunoglobulin-like variable motif-containing protein isoform X3

    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3

  4. XM_030254299.2 → XP_030110159.1  basic immunoglobulin-like variable motif-containing protein isoform X3

    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3

  5. XM_036165121.1 → XP_036021014.1  basic immunoglobulin-like variable motif-containing protein isoform X4

  6. XM_030254293.1 → XP_030110153.1  basic immunoglobulin-like variable motif-containing protein isoform X3

    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3

  7. XM_006496004.4 → XP_006496067.1  basic immunoglobulin-like variable motif-containing protein isoform X3

    See identical proteins and their annotated locations for XP_006496067.1

    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3

  8. XM_036165119.1 → XP_036021012.1  basic immunoglobulin-like variable motif-containing protein isoform X3

    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3

  9. XM_017320721.3 → XP_017176210.1  basic immunoglobulin-like variable motif-containing protein isoform X3

    UniProtKB/Swiss-Prot
    Q8CBX9, Q8CCP3
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CBX9.1 GenPept UniProtKB/Swiss-Prot:Q8CBX9

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