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Garin1a golgi associated RAB2 interactor 1A [ Mus musculus (house mouse) ]

Gene ID: 245884, updated on 5-Mar-2024

Summary

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Official Symbol
Garin1aprovided by MGI
Official Full Name
golgi associated RAB2 interactor 1Aprovided by MGI
Primary source
MGI:MGI:2141439
See related
Ensembl:ENSMUSG00000079652 AllianceGenome:MGI:2141439
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GARI; Fam71f2
Summary
Orthologous to human FAM71F2 (family with sequence similarity 71 member F2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 170.5) See more
Orthologs
human all
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Genomic context

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Location:
6 A3.3; 6 12.36 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (29276298..29290684)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (29277528..29290684)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40358 Neighboring gene STARR-positive B cell enhancer ABC_E4814 Neighboring gene hypoxia inducible lipid droplet associated Neighboring gene STARR-seq mESC enhancer starr_15437 Neighboring gene golgi associated RAB2 interactor 1B Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:29297688-29297797 Neighboring gene calumenin Neighboring gene opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. FAM71F1 binds to RAB2A and RAB2B and is essential for acrosome formation and male fertility in mice. Morohoshi A, et al. Development, 2021 Nov 1. PMID 34714330, Free PMC Article
  2. Large scale screening for novel rab effectors reveals unexpected broad Rab binding specificity. Fukuda M, et al. Mol Cell Proteomics, 2008 Jun. PMID 18256213
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in acrosome assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated RAB2 interactor protein 1A
Names
Golgi associated RAB2 interactor protein 1A
Golgi-associated Rab2B interactor
family with sequence similarity 71, member F2
protein FAM71F2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101486.2 → NP_001094956.1  Golgi-associated RAB2 interactor protein 1A isoform 1

    See identical proteins and their annotated locations for NP_001094956.1

    Status: VALIDATED

    Source sequence(s)
    AC044807, BC050974
    Consensus CDS
    CCDS51735.1
    UniProtKB/Swiss-Prot
    B2RXB0
    Related
    ENSMUSP00000110941.3, ENSMUST00000115286.4
    Conserved Domains (1) summary
    pfam12480
    Location:105 → 175
    DUF3699; Protein of unknown function (DUF3699)

  2. NM_001411706.1 → NP_001398635.1  Golgi-associated RAB2 interactor protein 1A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC044807, AC079277

RNA

  1. NR_156409.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC044807, AC079277
    Related
    ENSMUST00000167608.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    29276298..29290684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241060.4 → XP_011239362.1  Golgi-associated RAB2 interactor protein 1A isoform X1

    Conserved Domains (1) summary
    pfam12480
    Location:124 → 191
    DUF3699; Protein of unknown function (DUF3699)

  2. XM_011241061.4 → XP_011239363.1  Golgi-associated RAB2 interactor protein 1A isoform X2

    Conserved Domains (1) summary
    pfam12480
    Location:50 → 117
    DUF3699; Protein of unknown function (DUF3699)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RXB0.1 GenPept UniProtKB/Swiss-Prot:B2RXB0

Gene LinkOut

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