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Trappc1 trafficking protein particle complex 1 [ Mus musculus (house mouse) ]

Gene ID: 245828, updated on 23-Mar-2024

Summary

Official Symbol
Trappc1provided by MGI
Official Full Name
trafficking protein particle complex 1provided by MGI
Primary source
MGI:MGI:1098727
See related
Ensembl:ENSMUSG00000049299 AllianceGenome:MGI:1098727
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BET5; MUM2; D11Ertd172e
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Part of TRAPP complex. Is expressed in 1st branchial arch mandibular component; mandible primordium; and neural retina. Orthologous to human TRAPPC1 (trafficking protein particle complex subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 46.3), CNS E14 (RPKM 38.5) and 28 other tissues See more
Orthologs
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Genomic context

See Trappc1 in Genome Data Viewer
Location:
11 B3; 11 42.51 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (69214812..69216619)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (69323986..69325793)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40039 Neighboring gene STARR-positive B cell enhancer ABC_E3964 Neighboring gene centrobin, centrosomal BRCA2 interacting protein Neighboring gene STARR-positive B cell enhancer ABC_E1829 Neighboring gene potassium voltage-gated channel, shaker-related subfamily, beta member 3 Neighboring gene ring finger protein 227

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in COPII vesicle coating NAS
Non-traceable Author Statement
more info
PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport NAS
Non-traceable Author Statement
more info
PubMed 
involved_in vesicle coating NAS
Non-traceable Author Statement
more info
PubMed 
involved_in vesicle tethering NAS
Non-traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of TRAPP complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of TRAPPII protein complex NAS
Non-traceable Author Statement
more info
PubMed 
part_of TRAPPIII protein complex NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
trafficking protein particle complex subunit 1
Names
novel Sybindin-like family domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024206.2NP_001019377.1  trafficking protein particle complex subunit 1

    See identical proteins and their annotated locations for NP_001019377.1

    Status: VALIDATED

    Source sequence(s)
    BY479576, CK621128
    Consensus CDS
    CCDS24889.1
    UniProtKB/Swiss-Prot
    Q5NCF2
    UniProtKB/TrEMBL
    B1ASW5, Q14BF8
    Related
    ENSMUSP00000099662.2, ENSMUST00000102602.8
    Conserved Domains (1) summary
    cd14855
    Location:4133
    TRAPPC1_MUM2; Trafficking protein particle complex subunit 1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    69214812..69216619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)