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Sowahd sosondowah ankyrin repeat domain family member D [ Mus musculus (house mouse) ]

Gene ID: 245381, updated on 5-Mar-2024

Summary

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Official Symbol
Sowahdprovided by MGI
Official Full Name
sosondowah ankyrin repeat domain family member Dprovided by MGI
Primary source
MGI:MGI:3045274
See related
Ensembl:ENSMUSG00000044400 AllianceGenome:MGI:3045274
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ankrd58; A630014H24Rik
Summary
Orthologous to human SOWAHD (sosondowah ankyrin repeat domain family member D). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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Location:
X A3.3; X 21.46 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (36312498..36314071)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (37048845..37050418)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E11047 Neighboring gene NF-kappaB repressing factor Neighboring gene predicted gene 15008 Neighboring gene septin 6 Neighboring gene STARR-seq mESC enhancer starr_47007 Neighboring gene CapStarr-seq enhancer MGSCv37_chrX:34520906-34521122 Neighboring gene predicted gene, 26099 Neighboring gene small nucleolar RNA, H/ACA box 69 Neighboring gene ribosomal protein L39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC130350, MGC130351

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein SOWAHD
Names
ankyrin repeat domain 58
ankyrin repeat domain-containing protein 58
protein sosondowah homolog D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173779.4 → NP_776140.1  ankyrin repeat domain-containing protein SOWAHD

    See identical proteins and their annotated locations for NP_776140.1

    Status: VALIDATED

    Source sequence(s)
    AL589767
    Consensus CDS
    CCDS30067.1
    UniProtKB/Swiss-Prot
    Q8BY98
    Related
    ENSMUSP00000058152.2, ENSMUST00000060057.2
    Conserved Domains (3) summary
    cd00204
    Location:150 → 230
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:121 → 221
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:151 → 187
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    36312498..36314071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BY98.1 GenPept UniProtKB/Swiss-Prot:Q8BY98

Gene LinkOut

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