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B230307C23Rik RIKEN cDNA B230307C23 gene [ Mus musculus (house mouse) ]

Gene ID: 245305, updated on 3-Apr-2024

Summary

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Official Symbol
B230307C23Rikprovided by MGI
Official Full Name
RIKEN cDNA B230307C23 geneprovided by MGI
Primary source
MGI:MGI:3643396
See related
Ensembl:ENSMUSG00000080717 AllianceGenome:MGI:3643396
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG245305; 8030444G23Rik
Expression
Ubiquitous expression in frontal lobe adult (RPKM 2.1), CNS E11.5 (RPKM 1.9) and 28 other tissues See more
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Genomic context

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Location:
16; 16 C4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (97798278..97817956)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (97997078..98016756)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene C2 calcium-dependent domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_41640 Neighboring gene microRNA 6964 Neighboring gene zinc finger and BTB domain containing 21 Neighboring gene predicted gene, 53924 Neighboring gene RIKEN cDNA C030010L15 gene Neighboring gene STARR-positive B cell enhancer ABC_E9939 Neighboring gene vomeronasal 2, receptor, pseudogene 112 Neighboring gene STARR-seq mESC enhancer starr_41643 Neighboring gene RIKEN cDNA A630089N07 gene Neighboring gene STARR-seq mESC enhancer starr_41645 Neighboring gene predicted gene, 53925

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC245305
Names
zinc finger protein 80 pseudogene
zinc finger protein pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362093.2 → NP_001349022.1  uncharacterized protein LOC245305 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC163298
    UniProtKB/TrEMBL
    A0AA74KUP2
    Related
    ENSMUSP00000159743.1, ENSMUST00000249385.1
    Conserved Domains (4) summary
    COG5048
    Location:126 → 499
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:410 → 430
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
    pfam13465
    Location:591 → 616
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001362097.2 → NP_001349026.1  uncharacterized protein LOC245305 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC163298
    Consensus CDS
    CCDS88981.1
    UniProtKB/TrEMBL
    A0A338P767, Q8BLB2
    Related
    ENSMUSP00000156259.2, ENSMUST00000231913.2
    Conserved Domains (1) summary
    pfam01352
    Location:4 → 44
    KRAB; KRAB box

  3. NM_001377008.1 → NP_001363937.1  uncharacterized protein LOC245305 ioform 3

    Status: VALIDATED

    Source sequence(s)
    AC163298
    Conserved Domains (2) summary
    sd00017
    Location:79 → 97
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box

  4. NM_001377009.1 → NP_001363938.1  uncharacterized protein LOC245305 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC163298
    UniProtKB/TrEMBL
    A0A338P6F4
    Related
    ENSMUSP00000155960.2, ENSMUST00000232308.3
    Conserved Domains (1) summary
    pfam01352
    Location:4 → 44
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    97798278..97817956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249113.1 → XP_030104973.1  uncharacterized protein LOC245305 isoform X4

    UniProtKB/TrEMBL
    A0A338P767, Q8BLB2
    Related
    ENSMUSP00000156366.2, ENSMUST00000232387.2
    Conserved Domains (1) summary
    pfam01352
    Location:4 → 44
    KRAB; KRAB box

  2. XM_036159929.1 → XP_036015822.1  uncharacterized protein LOC245305 isoform X3

    Conserved Domains (1) summary
    pfam01352
    Location:3 → 44
    KRAB; KRAB box

  3. XM_030249112.2 → XP_030104972.1  uncharacterized protein LOC245305 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:126 → 499
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:410 → 430
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
    pfam13465
    Location:535 → 559
    zf-H2C2_2; Zinc-finger double domain

  4. XM_036159928.1 → XP_036015821.1  uncharacterized protein LOC245305 isoform X2

    Conserved Domains (2) summary
    sd00017
    Location:79 → 97
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3 → 44
    KRAB; KRAB box

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_030633.1: Suppressed sequence

    Description
    NG_030633.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

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