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9930111J21Rik2 RIKEN cDNA 9930111J21 gene 2 [ Mus musculus (house mouse) ]

Gene ID: 245240, updated on 8-Feb-2024

Summary

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Official Symbol
9930111J21Rik2provided by MGI
Official Full Name
RIKEN cDNA 9930111J21 gene 2provided by MGI
Primary source
MGI:MGI:3711310
See related
Ensembl:ENSMUSG00000069892 AllianceGenome:MGI:3711310
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Irgb5; 9930111J21Rik
Expression
Biased expression in spleen adult (RPKM 9.7), mammary gland adult (RPKM 6.3) and 13 other tissues See more
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Genomic context

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Location:
11 B1.2; 11 29.01 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (48928487..48942069, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (49037660..49051242, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42074 Neighboring gene STARR-seq mESC enhancer starr_29366 Neighboring gene T cell specific GTPase 1 Neighboring gene poly(rC) binding protein 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_29368 Neighboring gene STARR-positive B cell enhancer mm9_chr11:48863673-48863974 Neighboring gene T cell specific GTPase 2 Neighboring gene predicted gene 12187

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage. Bekpen C, et al. Genome Biol, 2005. PMID 16277747, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
interferon inducible GTPase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173434.1 → NP_775610.1  interferon inducible GTPase

    See identical proteins and their annotated locations for NP_775610.1

    Status: PROVISIONAL

    Source sequence(s)
    AK037088
    Consensus CDS
    CCDS36144.1
    UniProtKB/TrEMBL
    A0A1G5SJG9, Q8CB10
    Related
    ENSMUSP00000090839.2, ENSMUST00000093152.2
    Conserved Domains (2) summary
    cd04104
    Location:70 → 266
    p47_IIGP_like; p47 GTPase family includes IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1
    pfam05049
    Location:36 → 397
    IIGP; Interferon-inducible GTPase (IIGP)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    48928487..48942069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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