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Gprin3 GPRIN family member 3 [ Mus musculus (house mouse) ]

Gene ID: 243385, updated on 5-Mar-2024

Summary

Official Symbol
Gprin3provided by MGI
Official Full Name
GPRIN family member 3provided by MGI
Primary source
MGI:MGI:1924785
See related
Ensembl:ENSMUSG00000045441 AllianceGenome:MGI:1924785
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C730021L23; C030038J10Rik
Summary
Predicted to be involved in neuron projection development. Predicted to be active in plasma membrane. Orthologous to human GPRIN3 (GPRIN family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E18 (RPKM 1.1), lung adult (RPKM 0.9) and 23 other tissues See more
Orthologs
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Genomic context

Location:
6 B3; 6 28.48 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (59317988..59403291, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (59344500..59426306, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16030 Neighboring gene predicted gene, 22367 Neighboring gene STARR-seq mESC enhancer starr_16031 Neighboring gene STARR-positive B cell enhancer ABC_E4830 Neighboring gene STARR-positive B cell enhancer ABC_E8106 Neighboring gene STARR-seq mESC enhancer starr_16032 Neighboring gene STARR-seq mESC enhancer starr_16034 Neighboring gene STARR-seq mESC enhancer starr_16035 Neighboring gene tigger transposable element derived 2 Neighboring gene STARR-seq mESC enhancer starr_16038 Neighboring gene STARR-seq mESC enhancer starr_16039 Neighboring gene STARR-seq mESC enhancer starr_16041 Neighboring gene STARR-seq mESC enhancer starr_16042 Neighboring gene STARR-seq mESC enhancer starr_16043 Neighboring gene predicted gene, 35195 Neighboring gene predicted gene, 22622 Neighboring gene STARR-seq mESC enhancer starr_16044 Neighboring gene STARR-seq mESC enhancer starr_16045 Neighboring gene STARR-seq mESC enhancer starr_16047 Neighboring gene deoxycytidine kinase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
G protein-regulated inducer of neurite outgrowth 3
Names
GRIN3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183183.3NP_899006.1  G protein-regulated inducer of neurite outgrowth 3

    See identical proteins and their annotated locations for NP_899006.1

    Status: VALIDATED

    Source sequence(s)
    AC131708
    Consensus CDS
    CCDS20199.1
    UniProtKB/Swiss-Prot
    Q69Z30, Q8BWS5
    UniProtKB/TrEMBL
    B2RQZ6
    Related
    ENSMUSP00000051805.5, ENSMUST00000051065.6
    Conserved Domains (1) summary
    pfam15235
    Location:637758
    GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    59317988..59403291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506084.4XP_006506147.2  G protein-regulated inducer of neurite outgrowth 3 isoform X1

    Conserved Domains (2) summary
    PTZ00449
    Location:565709
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    pfam15235
    Location:723844
    GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus