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2900026A02Rik RIKEN cDNA 2900026A02 gene [ Mus musculus (house mouse) ]

Gene ID: 243219, updated on 5-Mar-2024

Summary

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Official Symbol
2900026A02Rikprovided by MGI
Official Full Name
RIKEN cDNA 2900026A02 geneprovided by MGI
Primary source
MGI:MGI:1920194
See related
Ensembl:ENSMUSG00000051339 AllianceGenome:MGI:1920194
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm449; Kiaa1671; mKIAA1671; A530094D01; 8430408O14Rik
Summary
Is expressed in alimentary system; lower urinary tract; sensory organ; and skin. Orthologous to human KIAA1671 (KIAA1671). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in small intestine adult (RPKM 14.4), large intestine adult (RPKM 14.2) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See 2900026A02Rik in Genome Data Viewer
Location:
5 F; 5 55.38 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (113234189..113369158, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (113086323..113221292, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 43247 Neighboring gene crystallin, beta B2 Neighboring gene crystallin, beta B3 Neighboring gene RIKEN cDNA 4833439F03 gene Neighboring gene VISTA enhancer mm329 Neighboring gene predicted gene, 42161 Neighboring gene LHFPL tetraspan subfamily member 7 Neighboring gene small G protein signaling modulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein KIAA1671

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347397.1 → NP_001334326.1  uncharacterized protein KIAA1671 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC162528
    Consensus CDS
    CCDS84933.1
    UniProtKB/TrEMBL
    A0A1D5RLN6
    Related
    ENSMUSP00000148442.2, ENSMUST00000212276.2

  2. NM_001375886.1 → NP_001362815.1  uncharacterized protein KIAA1671 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC162528
    UniProtKB/TrEMBL
    A0A1B0GR85
    Conserved Domains (3) summary
    PRK07003
    Location:142 → 406
    PRK07003; DNA polymerase III subunit gamma/tau
    PRK10263
    Location:207 → 761
    PRK10263; DNA translocase FtsK; Provisional
    pfam15327
    Location:1593 → 1758
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

  3. NM_172884.3 → NP_766472.1  uncharacterized protein KIAA1671 isoform 2

    See identical proteins and their annotated locations for NP_766472.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AC162528, AK171617
    Consensus CDS
    CCDS39217.1
    UniProtKB/Swiss-Prot
    B2RVT5, Q5DTV9, Q8BRV5
    Related
    ENSMUSP00000058789.9, ENSMUST00000050125.9
    Conserved Domains (1) summary
    pfam15327
    Location:133 → 299
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    113234189..113369158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320881.2 → XP_017176370.1  uncharacterized protein KIAA1671 isoform X1

    UniProtKB/TrEMBL
    A0A1B0GR85
    Related
    ENSMUSP00000147419.2, ENSMUST00000211733.2
    Conserved Domains (3) summary
    PRK07003
    Location:142 → 406
    PRK07003; DNA polymerase III subunit gamma/tau
    PRK10263
    Location:207 → 761
    PRK10263; DNA translocase FtsK; Provisional
    pfam15327
    Location:1593 → 1758
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

  2. XM_036165128.1 → XP_036021021.1  uncharacterized protein KIAA1671 isoform X1

    UniProtKB/TrEMBL
    A0A1B0GR85
    Conserved Domains (3) summary
    PRK07003
    Location:142 → 406
    PRK07003; DNA polymerase III subunit gamma/tau
    PRK10263
    Location:207 → 761
    PRK10263; DNA translocase FtsK; Provisional
    pfam15327
    Location:1593 → 1758
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

  3. XM_030254503.2 → XP_030110363.1  uncharacterized protein KIAA1671 isoform X1

    UniProtKB/TrEMBL
    A0A1B0GR85
    Conserved Domains (3) summary
    PRK07003
    Location:142 → 406
    PRK07003; DNA polymerase III subunit gamma/tau
    PRK10263
    Location:207 → 761
    PRK10263; DNA translocase FtsK; Provisional
    pfam15327
    Location:1593 → 1758
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain

  4. XM_006534936.4 → XP_006534999.1  uncharacterized protein KIAA1671 isoform X1

    See identical proteins and their annotated locations for XP_006534999.1

    UniProtKB/TrEMBL
    A0A1B0GR85
    Conserved Domains (3) summary
    PRK07003
    Location:142 → 406
    PRK07003; DNA polymerase III subunit gamma/tau
    PRK10263
    Location:207 → 761
    PRK10263; DNA translocase FtsK; Provisional
    pfam15327
    Location:1593 → 1758
    Tankyrase_bdg_C; Tankyrase binding protein C terminal domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BRV5.1 GenPept UniProtKB/Swiss-Prot:Q8BRV5

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