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Tmem156 transmembrane protein 156 [ Mus musculus (house mouse) ]

Gene ID: 243025, updated on 5-Mar-2024

Summary

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Official Symbol
Tmem156provided by MGI
Official Full Name
transmembrane protein 156provided by MGI
Primary source
MGI:MGI:2685292
See related
Ensembl:ENSMUSG00000037913 AllianceGenome:MGI:2685292
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm446; Col28a1
Summary
Orthologous to human TMEM156 (transmembrane protein 156). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
5 C3.1; 5 33.58 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (65215558..65249524, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (65058215..65092181, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene toll-like receptor 6 Neighboring gene family with sequence similarity 114, member A1 Neighboring gene STARR-seq mESC enhancer starr_13253 Neighboring gene microRNA 574 Neighboring gene STARR-seq mESC enhancer starr_13254 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:65397377-65397486 Neighboring gene predicted gene, 32374 Neighboring gene STARR-seq mESC enhancer starr_13256 Neighboring gene STARR-seq mESC enhancer starr_13258 Neighboring gene STARR-seq mESC enhancer starr_13259 Neighboring gene kelch-like 5 Neighboring gene predicted gene, 54287 Neighboring gene STARR-positive B cell enhancer ABC_E849 Neighboring gene WD repeat domain 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
transmembrane protein 156
Names
collagen, type XXVIII, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370814.2 → NP_001357743.1  transmembrane protein 156

    Status: VALIDATED

    Source sequence(s)
    AC124428, AC132222
    UniProtKB/TrEMBL
    D3Z447
    Related
    ENSMUSP00000044102.4, ENSMUST00000043352.8
    Conserved Domains (1) summary
    pfam15106
    Location:39 → 264
    TMEM156; TMEM156 protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    65215558..65249524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321216.1 → XP_017176705.1  transmembrane protein 156 isoform X9

    Conserved Domains (1) summary
    pfam15106
    Location:1 → 194
    TMEM156; TMEM156 protein family

  2. XM_017321214.1 → XP_017176703.1  transmembrane protein 156 isoform X7

    UniProtKB/TrEMBL
    A0A1D5RM02
    Related
    ENSMUSP00000148573.2, ENSMUST00000212194.2
    Conserved Domains (1) summary
    pfam15106
    Location:42 → 241
    TMEM156; TMEM156 protein family

  3. XM_017321213.1 → XP_017176702.1  transmembrane protein 156 isoform X6

    Conserved Domains (1) summary
    pfam15106
    Location:51 → 247
    TMEM156; TMEM156 protein family

  4. XM_017321209.1 → XP_017176698.1  transmembrane protein 156 isoform X1

    Conserved Domains (1) summary
    pfam15106
    Location:51 → 276
    TMEM156; TMEM156 protein family

  5. XM_017321212.1 → XP_017176701.1  transmembrane protein 156 isoform X3

    UniProtKB/TrEMBL
    D3Z447
    Conserved Domains (1) summary
    pfam15106
    Location:39 → 264
    TMEM156; TMEM156 protein family

  6. XM_017321210.1 → XP_017176699.1  transmembrane protein 156 isoform X1

    Conserved Domains (1) summary
    pfam15106
    Location:51 → 276
    TMEM156; TMEM156 protein family

  7. XM_036165125.1 → XP_036021018.1  transmembrane protein 156 isoform X11

    Conserved Domains (1) summary
    pfam15106
    Location:1 → 142
    TMEM156; TMEM156 protein family

  8. XM_030254500.2 → XP_030110360.1  transmembrane protein 156 isoform X5

    UniProtKB/TrEMBL
    D3Z447
    Conserved Domains (1) summary
    pfam15106
    Location:39 → 264
    TMEM156; TMEM156 protein family

  9. XM_017321211.3 → XP_017176700.1  transmembrane protein 156 isoform X2

    UniProtKB/TrEMBL
    A0A1D5RLR8
    Related
    ENSMUSP00000148480.2, ENSMUST00000212080.2
    Conserved Domains (1) summary
    pfam15106
    Location:51 → 276
    TMEM156; TMEM156 protein family

  10. XM_030254501.2 → XP_030110361.1  transmembrane protein 156 isoform X10

    UniProtKB/TrEMBL
    A0A1D5RLB5, A0A1D5RM02
    Related
    ENSMUSP00000148300.2, ENSMUST00000212640.2
    Conserved Domains (1) summary
    pfam15106
    Location:42 → 212
    TMEM156; TMEM156 protein family

  11. XM_036165124.1 → XP_036021017.1  transmembrane protein 156 isoform X4

    UniProtKB/TrEMBL
    A0A1D5RM02
    Conserved Domains (1) summary
    pfam15106
    Location:51 → 276
    TMEM156; TMEM156 protein family

  12. XM_017321215.2 → XP_017176704.1  transmembrane protein 156 isoform X8

    Conserved Domains (1) summary
    pfam15106
    Location:51 → 221
    TMEM156; TMEM156 protein family
Nucleotide Protein Strain
Heading Accession and Version

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