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Rsbn1l round spermatid basic protein 1-like [ Mus musculus (house mouse) ]

Gene ID: 242860, updated on 5-Mar-2024

Summary

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Official Symbol
Rsbn1lprovided by MGI
Official Full Name
round spermatid basic protein 1-likeprovided by MGI
Primary source
MGI:MGI:3036237
See related
Ensembl:ENSMUSG00000039968 AllianceGenome:MGI:3036237
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
8430412F05Rik; C330002G24Rik
Summary
Predicted to be active in nucleus. Orthologous to human RSBN1L (round spermatid basic protein 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 4.5), thymus adult (RPKM 3.6) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Rsbn1l in Genome Data Viewer
Location:
5 A3; 5 9.83 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (21097284..21163019, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (20892290..20957946, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene putative homeodomain transcription factor 2 Neighboring gene predicted gene, 42219 Neighboring gene STARR-seq mESC enhancer starr_12553 Neighboring gene STARR-positive B cell enhancer ABC_E1675 Neighboring gene STARR-seq mESC enhancer starr_12554 Neighboring gene transmembrane protein 60 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:20447096-20447297 Neighboring gene STARR-seq mESC enhancer starr_12555 Neighboring gene RIKEN cDNA A630072M18 gene Neighboring gene STARR-seq mESC enhancer starr_12556 Neighboring gene STARR-seq mESC enhancer starr_12557 Neighboring gene STARR-seq mESC enhancer starr_12559 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20484581-20484882 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20508606-20508906 Neighboring gene protein tyrosine phosphatase, non-receptor type 12 Neighboring gene STARR-positive B cell enhancer ABC_E10306 Neighboring gene STARR-seq mESC enhancer starr_12560 Neighboring gene STARR-positive B cell enhancer mm9_chr5:20561662-20561962 Neighboring gene STARR-seq mESC enhancer starr_12561 Neighboring gene predicted gene, 42221

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
lysine-specific demethylase RSBN1L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080977.1 → NP_001074446.1  lysine-specific demethylase RSBN1L

    See identical proteins and their annotated locations for NP_001074446.1

    Status: VALIDATED

    Source sequence(s)
    AC125024, AK033374, BF453931, BY014220, BY106463
    Consensus CDS
    CCDS39020.1
    UniProtKB/TrEMBL
    D3Z0K6
    Related
    ENSMUSP00000039482.6, ENSMUST00000036489.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    21097284..21163019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001784694.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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