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Zfp933 zinc finger protein 933 [ Mus musculus (house mouse) ]

Gene ID: 242747, updated on 8-Feb-2024

Summary

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Official Symbol
Zfp933provided by MGI
Official Full Name
zinc finger protein 933provided by MGI
Primary source
MGI:MGI:1922865
See related
Ensembl:ENSMUSG00000059423 AllianceGenome:MGI:1922865
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810408P10Rik
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in forelimb bud. Orthologous to human ZNF101 (zinc finger protein 101). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cerebellum adult (RPKM 2.6), frontal lobe adult (RPKM 2.5) and 23 other tissues See more
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Genomic context

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Location:
4 E1; 4 78.56 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (147906184..147933583, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (147822986..147849126, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13148 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147131061-147131362 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147137358-147137659 Neighboring gene zinc finger protein 984 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147149499-147149800 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147153946-147154247 Neighboring gene STARR-positive B cell enhancer ABC_E4724 Neighboring gene STARR-positive B cell enhancer ABC_E9623 Neighboring gene STARR-positive B cell enhancer ABC_E6282 Neighboring gene STARR-seq mESC enhancer starr_12061 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147185666-147185967 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:147187429-147187616 Neighboring gene STARR-positive B cell enhancer mm9_chr4:147188614-147188915 Neighboring gene ribosomal protein S19, pseudogene 3 Neighboring gene STARR-positive B cell enhancer ABC_E4726 Neighboring gene STARR-positive B cell enhancer ABC_E181 Neighboring gene migration and invasion inhibitory protein Neighboring gene Friend virus susceptibility 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Spatiotemporal regulation of GLI target genes in the mammalian limb bud. Lewandowski JP, et al. Dev Biol, 2015 Oct 1. PMID 26238476, Free PMC Article
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Clone Names

  • MGC67181

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC242747
Names
zinc finger-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355730.1 → NP_001342659.1  uncharacterized protein LOC242747 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL607066, BC058101, CB525762
    Conserved Domains (2) summary
    COG5048
    Location:125 → 435
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:353 → 373
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. NM_198619.3 → NP_941021.1  uncharacterized protein LOC242747 isoform 1

    See identical proteins and their annotated locations for NP_941021.1

    Status: VALIDATED

    Source sequence(s)
    AL607066, BC058101, CB525762
    Consensus CDS
    CCDS38963.1
    UniProtKB/TrEMBL
    Q6PEE4
    Related
    ENSMUSP00000101343.2, ENSMUST00000105718.8
    Conserved Domains (5) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    COG5048
    Location:157 → 467
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385 → 405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 40
    KRAB; KRAB box
    pfam13465
    Location:146 → 170
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    147906184..147933583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253575.2 → XP_030109435.1  uncharacterized protein LOC242747 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:125 → 435
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:353 → 373
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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