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Lrrc7 leucine rich repeat containing 7 [ Mus musculus (house mouse) ]

Gene ID: 242274, updated on 11-Apr-2024

Summary

Official Symbol
Lrrc7provided by MGI
Official Full Name
leucine rich repeat containing 7provided by MGI
Primary source
MGI:MGI:2676665
See related
Ensembl:ENSMUSG00000028176 AllianceGenome:MGI:2676665
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
densin; mKIAA1365; B230334C09Rik
Summary
Predicted to enable protein C-terminus binding activity. Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; positive regulation of neuron projection development; and receptor clustering. Predicted to be located in several cellular components, including centrosome; dendritic spine; and filopodium. Predicted to be active in axon initial segment; basolateral plasma membrane; and postsynaptic density. Predicted to colocalize with actin cytoskeleton. Is expressed in brain and spinal cord. Used to study developmental disorder of mental health. Orthologous to human LRRC7 (leucine rich repeat containing 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in frontal lobe adult (RPKM 5.5), cortex adult (RPKM 5.0) and 5 other tissues See more
Orthologs
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Genomic context

Location:
3 H4; 3 81.68 cM
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (157772823..158268254, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (158067186..158561983, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_09389 Neighboring gene STARR-positive B cell enhancer ABC_E2684 Neighboring gene STARR-positive B cell enhancer mm9_chr3:157723907-157724208 Neighboring gene STARR-positive B cell enhancer ABC_E11232 Neighboring gene STARR-positive B cell enhancer ABC_E7953 Neighboring gene serine and arginine-rich splicing factor 11 Neighboring gene leucine rich repeat containing 40 Neighboring gene STARR-seq mESC enhancer starr_09391 Neighboring gene STARR-seq mESC enhancer starr_09392 Neighboring gene STARR-seq mESC enhancer starr_09393 Neighboring gene STARR-seq mESC enhancer starr_09394 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in embryo development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in establishment or maintenance of epithelial cell apical/basal polarity IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in neurotransmitter receptor transport postsynaptic membrane to endosome IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
 
involved_in receptor clustering IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
colocalizes_with actin cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
is_active_in adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in axon initial segment IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in axon initial segment ISO
Inferred from Sequence Orthology
more info
 
is_active_in basolateral plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in dendritic spine ISO
Inferred from Sequence Orthology
more info
 
located_in filopodium ISO
Inferred from Sequence Orthology
more info
 
is_active_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynaptic density IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in postsynaptic density membrane ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with postsynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
leucine-rich repeat-containing protein 7
Names
densin 180

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081358.4NP_001074827.1  leucine-rich repeat-containing protein 7 isoform 1

    See identical proteins and their annotated locations for NP_001074827.1

    Status: VALIDATED

    Source sequence(s)
    AC102540, AC118595, AC134449, AC145301
    UniProtKB/TrEMBL
    A0A0G2JFZ5, E9Q6L9
    Related
    ENSMUSP00000101659.2, ENSMUST00000106044.6
    Conserved Domains (4) summary
    cd00116
    Location:166406
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00992
    Location:14521537
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:3152
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:144199
    LRR_8; Leucine rich repeat
  2. NM_001291452.3NP_001278381.1  leucine-rich repeat-containing protein 7 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC102540, AC118595, AC134449, AC145301
    Consensus CDS
    CCDS80073.1
    UniProtKB/Swiss-Prot
    Q80TE7
    UniProtKB/TrEMBL
    A0A0G2JDT9
    Related
    ENSMUSP00000142498.2, ENSMUST00000200137.5
    Conserved Domains (4) summary
    cd00116
    Location:166406
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00992
    Location:14051490
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:3152
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:144199
    LRR_8; Leucine rich repeat
  3. NM_001291453.3NP_001278382.1  leucine-rich repeat-containing protein 7 isoform 3

    See identical proteins and their annotated locations for NP_001278382.1

    Status: VALIDATED

    Source sequence(s)
    AC102540, AC118595, AC134449, AC145301
    Consensus CDS
    CCDS80072.1
    UniProtKB/Swiss-Prot
    Q80TE7
    UniProtKB/TrEMBL
    B9EHV0
    Related
    ENSMUSP00000142440.2, ENSMUST00000199890.5
    Conserved Domains (3) summary
    COG4886
    Location:97407
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:3152
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:51107
    LRR_8; Leucine rich repeat
  4. NM_001370781.1NP_001357710.1  leucine-rich repeat-containing protein 7 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC102540, AC118595, AC134449, AC145301
    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:14851570
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  5. NM_001370782.1NP_001357711.1  leucine-rich repeat-containing protein 7 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC102540, AC118595, AC134449, AC145301
    UniProtKB/Swiss-Prot
    Q80TE7
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:14381523
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    157772823..158268254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006501512.5XP_006501575.1  leucine-rich repeat-containing protein 7 isoform X9

    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:13351420
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  2. XM_030252624.2XP_030108484.1  leucine-rich repeat-containing protein 7 isoform X15

    UniProtKB/Swiss-Prot
    Q80TE7
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:13551440
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  3. XM_006501510.5XP_006501573.1  leucine-rich repeat-containing protein 7 isoform X5

    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:14021487
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  4. XM_006501508.5XP_006501571.1  leucine-rich repeat-containing protein 7 isoform X4

    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:14181503
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  5. XM_017319582.3XP_017175071.1  leucine-rich repeat-containing protein 7 isoform X8

    UniProtKB/Swiss-Prot
    Q80TE7
    Conserved Domains (3) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  6. XM_006501511.5XP_006501574.1  leucine-rich repeat-containing protein 7 isoform X6

    UniProtKB/Swiss-Prot
    Q80TE7
    UniProtKB/TrEMBL
    A0A571BEA5
    Related
    ENSMUSP00000158628.3, ENSMUST00000238317.3
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:13981483
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  7. XM_036163108.1XP_036019001.1  leucine-rich repeat-containing protein 7 isoform X7

    UniProtKB/Swiss-Prot
    Q80TE7
    Conserved Domains (3) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:84140
    LRR_8; Leucine rich repeat
  8. XM_006501505.5XP_006501568.1  leucine-rich repeat-containing protein 7 isoform X2

    UniProtKB/Swiss-Prot
    Q80TE7
    Conserved Domains (4) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:14451530
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  9. XM_006501507.5XP_006501570.1  leucine-rich repeat-containing protein 7 isoform X3

    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Conserved Domains (3) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat
  10. XM_030252621.2XP_030108481.1  leucine-rich repeat-containing protein 7 isoform X10

    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Conserved Domains (4) summary
    COG4886
    Location:97407
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:13021387
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:3152
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:52107
    LRR_8; Leucine rich repeat
  11. XM_011240122.4XP_011238424.1  leucine-rich repeat-containing protein 7 isoform X1

    See identical proteins and their annotated locations for XP_011238424.1

    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Related
    ENSMUSP00000143365.2, ENSMUST00000200196.5
    Conserved Domains (4) summary
    COG4886
    Location:92402
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:14471532
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:2647
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:47102
    LRR_8; Leucine rich repeat
  12. XM_006501504.5XP_006501567.1  leucine-rich repeat-containing protein 7 isoform X1

    See identical proteins and their annotated locations for XP_006501567.1

    UniProtKB/TrEMBL
    A0A0G2JFZ5
    Conserved Domains (4) summary
    COG4886
    Location:92402
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:14471532
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:2647
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:47102
    LRR_8; Leucine rich repeat
  13. XM_011240123.3XP_011238425.1  leucine-rich repeat-containing protein 7 isoform X11

    Conserved Domains (3) summary
    COG4886
    Location:5223
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00992
    Location:12681353
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    sd00033
    Location:729
    LRR_RI; leucine-rich repeat [structural motif]
  14. XM_036163109.1XP_036019002.1  leucine-rich repeat-containing protein 7 isoform X13

    Conserved Domains (1) summary
    cd00992
    Location:744829
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
  15. XM_011240124.4XP_011238426.1  leucine-rich repeat-containing protein 7 isoform X12

    Conserved Domains (1) summary
    cd00992
    Location:811896
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
  16. XM_030252622.2XP_030108482.1  leucine-rich repeat-containing protein 7 isoform X14

    Conserved Domains (3) summary
    COG4886
    Location:130440
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6485
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:85140
    LRR_8; Leucine rich repeat

RNA

  1. XR_003954326.2 RNA Sequence

  2. XR_004941324.1 RNA Sequence

  3. XR_004941323.1 RNA Sequence

  4. XR_004941322.1 RNA Sequence

  5. XR_004941325.1 RNA Sequence

  6. XR_004941326.1 RNA Sequence