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D430041D05Rik RIKEN cDNA D430041D05 gene [ Mus musculus (house mouse) ]

Gene ID: 241589, updated on 3-Apr-2024

Summary

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Official Symbol
D430041D05Rikprovided by MGI
Official Full Name
RIKEN cDNA D430041D05 geneprovided by MGI
Primary source
MGI:MGI:2181743
See related
Ensembl:ENSMUSG00000068373 AllianceGenome:MGI:2181743
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G2; 9630056G07Rik
Summary
Is expressed in nervous system; neural retina; thymus; and upper jaw molar. Orthologous to human KIAA1549L (KIAA1549 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 8.6), cerebellum adult (RPKM 6.9) and 7 other tissues See more
Orthologs
human all
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Genomic context

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Location:
2 E2; 2 54.59 cM
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (103973418..104242595, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104143073..104411870, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A930018P22 gene Neighboring gene CD59a antigen Neighboring gene STARR-seq mESC enhancer starr_05283 Neighboring gene STARR-seq mESC enhancer starr_05284 Neighboring gene predicted gene, 22501 Neighboring gene STARR-seq mESC enhancer starr_05287 Neighboring gene predicted gene 13883 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_05288 Neighboring gene STARR-seq mESC enhancer starr_05290 Neighboring gene predicted gene, 35606 Neighboring gene microRNA 1902 Neighboring gene homeodomain interacting protein kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of differentially expressed genes by restriction endonuclease-based gene expression fingerprinting. Ivanova NB, et al. Nucleic Acids Res, 1995 Aug 11. PMID 7659517, Free PMC Article
  2. Characterization of a novel gene adjacent to PAX6, revealing synteny conservation with functional significance. Kleinjan DA, et al. Mamm Genome, 2002 Feb. PMID 11889558
  3. A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1. Gawin B, et al. Genome Res, 1999 Nov. PMID 10568747, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0606 protein KIAA1549L homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033347.2 → NP_001028519.2  UPF0606 protein KIAA1549L homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AI606651, AI845358, AK052518, AL844591, BB646253, BC096034, BF464989, BX517992, CN457086, CX239849
    Consensus CDS
    CCDS38190.1
    UniProtKB/TrEMBL
    D3YZ21
    Related
    ENSMUSP00000106756.2, ENSMUST00000089726.10
    Conserved Domains (1) summary
    pfam12877
    Location:498 → 1134
    DUF3827; Domain of unknown function (DUF3827)

  2. NM_001368844.1 → NP_001355773.1  UPF0606 protein KIAA1549L homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL844591, AL954370, BX813317
    Consensus CDS
    CCDS89531.1
    UniProtKB/TrEMBL
    A0A2R8VHF1
    Related
    ENSMUSP00000155023.2, ENSMUST00000136156.9
    Conserved Domains (1) summary
    pfam12877
    Location:498 → 1135
    DUF3827; Domain of unknown function (DUF3827)

  3. NM_001419546.1 → NP_001406475.1  UPF0606 protein KIAA1549L homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL844591, AL954370, BX813317

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    103973418..104242595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239527.3 → XP_011237829.1  UPF0606 protein KIAA1549L homolog isoform X2

    UniProtKB/TrEMBL
    A0A2R8VKG2
    Conserved Domains (2) summary
    PHA03247
    Location:107 → 667
    PHA03247; large tegument protein UL36; Provisional
    pfam12877
    Location:1230 → 1866
    DUF3827; Domain of unknown function (DUF3827)

  2. XM_011239526.3 → XP_011237828.1  UPF0606 protein KIAA1549L homolog isoform X1

    UniProtKB/TrEMBL
    A0A2R8VKG2
    Related
    ENSMUSP00000155485.2, ENSMUST00000230671.2
    Conserved Domains (2) summary
    PHA03247
    Location:107 → 667
    PHA03247; large tegument protein UL36; Provisional
    pfam12877
    Location:1230 → 1867
    DUF3827; Domain of unknown function (DUF3827)

  3. XM_006499487.5 → XP_006499550.1  UPF0606 protein KIAA1549L homolog isoform X5

    UniProtKB/TrEMBL
    F6ZGR6
    Related
    ENSMUSP00000117041.3, ENSMUST00000141159.9
    Conserved Domains (1) summary
    pfam12877
    Location:383 → 1020
    DUF3827; Domain of unknown function (DUF3827)

  4. XM_011239528.4 → XP_011237830.1  UPF0606 protein KIAA1549L homolog isoform X4

    UniProtKB/TrEMBL
    A0A2R8VKG2
    Conserved Domains (2) summary
    PHA03247
    Location:107 → 667
    PHA03247; large tegument protein UL36; Provisional
    pfam12877
    Location:1230 → 1806
    DUF3827; Domain of unknown function (DUF3827)

RNA

  1. XR_866274.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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