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Natd1 N-acetyltransferase domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 24083, updated on 5-Mar-2024

Summary

Official Symbol
Natd1provided by MGI
Official Full Name
N-acetyltransferase domain containing 1provided by MGI
Primary source
MGI:MGI:1344388
See related
Ensembl:ENSMUSG00000018931 AllianceGenome:MGI:1344388
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
F3-2; Gtlf3b; Gm16515
Summary
Is expressed in pancreas; skeleton; telencephalon meninges; testis; and trunk mesenchyme. Orthologous to human NATD1 (N-acetyltransferase domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 27.2), mammary gland adult (RPKM 23.1) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 B2; 11 37.93 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (60793072..60804618, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (60902246..60913792, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 11 Neighboring gene STARR-positive B cell enhancer ABC_E10679 Neighboring gene STARR-seq mESC enhancer starr_29661 Neighboring gene predicted gene, 26534 Neighboring gene predicted gene, 39830 Neighboring gene STARR-seq mESC enhancer starr_29662 Neighboring gene mitogen-activated protein kinase kinase 3, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E2993 Neighboring gene mitogen-activated protein kinase kinase 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
protein NATD1
Names
N-acetyltransferase domain-containing protein 1
gene trap locus F3b
gene trap locus protein F3-2
gene trap locus protein F3b
protein GTLF3B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025294.5NP_079570.1  protein NATD1

    See identical proteins and their annotated locations for NP_079570.1

    Status: VALIDATED

    Source sequence(s)
    AK004720, AK080453, BY196792
    Consensus CDS
    CCDS24802.1
    UniProtKB/Swiss-Prot
    Q9DBW3
    Related
    ENSMUSP00000019075.4, ENSMUST00000019075.4
    Conserved Domains (1) summary
    pfam14542
    Location:26100
    Acetyltransf_CG; GCN5-related N-acetyl-transferase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    60793072..60804618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)