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Rgsl1 regulator of G-protein signaling like 1 [ Mus musculus (house mouse) ]

Gene ID: 240816, updated on 5-Mar-2024

Summary

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Official Symbol
Rgsl1provided by MGI
Official Full Name
regulator of G-protein signaling like 1provided by MGI
Primary source
MGI:MGI:2685048
See related
Ensembl:ENSMUSG00000042641 AllianceGenome:MGI:2685048
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm202; Rgsl2; 4930415K13Rik
Summary
Orthologous to human RGSL1 (regulator of G protein signaling like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 2.3), cortex adult (RPKM 0.6) and 2 other tissues See more
Orthologs
human all
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Genomic context

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See Rgsl1 in Genome Data Viewer
Location:
1 G3; 1 65.43 cM
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (153653675..153723087, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (153777929..153847341, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:155593298-155593499 Neighboring gene STARR-positive B cell enhancer ABC_E5824 Neighboring gene STARR-positive B cell enhancer ABC_E9185 Neighboring gene STARR-positive B cell enhancer mm9_chr1:155598826-155599127 Neighboring gene regulator of G-protein signaling 16 Neighboring gene ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent) Neighboring gene predicted gene, 41974 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:155689311-155689530 Neighboring gene zinc finger protein 799 pseudogene Neighboring gene transmembrane epididymal family member 2 Neighboring gene transmembrane epididymal protein 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
regulator of G-protein signaling protein-like
Names
regulator of G-protein signaling 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243223.1 → NP_001230152.1  regulator of G-protein signaling protein-like isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AC157793, AK029630, AK161463, CJ042418
    Consensus CDS
    CCDS56645.1
    UniProtKB/TrEMBL
    H3BL40, V9GXV7
    Related
    ENSMUSP00000135642.2, ENSMUST00000124558.10
    Conserved Domains (2) summary
    cd08728
    Location:649 → 826
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:873 → 982
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  2. NM_001368270.1 → NP_001355199.1  regulator of G-protein signaling protein-like isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC099702, AC154140, AC157793
    Consensus CDS
    CCDS87893.1
    UniProtKB/TrEMBL
    A0A5F8MPV0, V9GXV7
    Related
    ENSMUSP00000159120.2, ENSMUST00000238926.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    153653675..153723087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529577.4 → XP_006529640.1  regulator of G-protein signaling protein-like isoform X3

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (2) summary
    cd08728
    Location:675 → 852
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:899 → 1008
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  2. XM_006529574.3 → XP_006529637.1  regulator of G-protein signaling protein-like isoform X1

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (2) summary
    cd08728
    Location:711 → 888
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:935 → 1044
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  3. XM_006529576.5 → XP_006529639.1  regulator of G-protein signaling protein-like isoform X2

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (2) summary
    cd08728
    Location:690 → 867
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:914 → 1023
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  4. XM_011248001.3 → XP_011246303.1  regulator of G-protein signaling protein-like isoform X6

    See identical proteins and their annotated locations for XP_011246303.1

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (2) summary
    cd08728
    Location:582 → 759
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:806 → 915
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  5. XM_036164772.1 → XP_036020665.1  regulator of G-protein signaling protein-like isoform X5

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (2) summary
    cd08728
    Location:608 → 785
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:832 → 941
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  6. XM_017320546.3 → XP_017176035.1  regulator of G-protein signaling protein-like isoform X4

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (2) summary
    cd08728
    Location:629 → 806
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:853 → 962
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  7. XM_006529579.2 → XP_006529642.1  regulator of G-protein signaling protein-like isoform X6

    See identical proteins and their annotated locations for XP_006529642.1

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (2) summary
    cd08728
    Location:582 → 759
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2
    cl02565
    Location:806 → 915
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  8. XM_011248002.4 → XP_011246304.1  regulator of G-protein signaling protein-like isoform X7

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (1) summary
    cd08728
    Location:711 → 888
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2

  9. XM_036164776.1 → XP_036020669.1  regulator of G-protein signaling protein-like isoform X8

    UniProtKB/TrEMBL
    V9GXV7
    Conserved Domains (1) summary
    cd08728
    Location:711 → 888
    RGS-like_2; Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 2

  10. XM_006529582.3 → XP_006529645.1  regulator of G-protein signaling protein-like isoform X9

  11. XM_017320549.1 → XP_017176038.1  regulator of G-protein signaling protein-like isoform X10

  12. XM_017320550.1 → XP_017176039.1  regulator of G-protein signaling protein-like isoform X11

  13. XM_017320548.1 → XP_017176037.1  regulator of G-protein signaling protein-like isoform X10

Nucleotide Protein Strain
Heading Accession and Version

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