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Pnma2 paraneoplastic antigen MA2 [ Mus musculus (house mouse) ]

Gene ID: 239157, updated on 5-Mar-2024

Summary

Official Symbol
Pnma2provided by MGI
Official Full Name
paraneoplastic antigen MA2provided by MGI
Primary source
MGI:MGI:2444129
See related
Ensembl:ENSMUSG00000046204 AllianceGenome:MGI:2444129
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA0883; A830049P17Rik
Summary
Predicted to be located in nucleus. Is expressed in nervous system. Orthologous to human PNMA2 (PNMA family member 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 4.3), cortex adult (RPKM 3.8) and 6 other tissues See more
Orthologs
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Genomic context

Location:
14 D1; 14 34.6 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (67139038..67157512)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (66901589..66920063)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9130 Neighboring gene dihydropyrimidinase-like 2 Neighboring gene STARR-positive B cell enhancer ABC_E1899 Neighboring gene STARR-positive B cell enhancer ABC_E2427 Neighboring gene predicted gene 5464 Neighboring gene STARR-seq mESC enhancer starr_37000 Neighboring gene predicted gene, 24258 Neighboring gene cold shock domain containing E1, RNA binding pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Clone Names

  • KIAA0883

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
paraneoplastic antigen Ma2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175498.4NP_780707.1  paraneoplastic antigen Ma2 homolog

    See identical proteins and their annotated locations for NP_780707.1

    Status: VALIDATED

    Source sequence(s)
    AK043718, AK084459, BB266086, BB493058, BY122944
    Consensus CDS
    CCDS27226.1
    UniProtKB/Swiss-Prot
    Q8BHK0
    UniProtKB/TrEMBL
    Q5DU13
    Related
    ENSMUSP00000086646.4, ENSMUST00000089236.11
    Conserved Domains (1) summary
    pfam14893
    Location:1327
    PNMA

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    67139038..67157512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518990.4XP_006519053.1  paraneoplastic antigen Ma2 homolog isoform X1

    See identical proteins and their annotated locations for XP_006519053.1

    UniProtKB/Swiss-Prot
    Q8BHK0
    UniProtKB/TrEMBL
    Q5DU13
    Conserved Domains (1) summary
    pfam14893
    Location:1327
    PNMA
  2. XM_006518989.5XP_006519052.1  paraneoplastic antigen Ma2 homolog isoform X1

    See identical proteins and their annotated locations for XP_006519052.1

    UniProtKB/Swiss-Prot
    Q8BHK0
    UniProtKB/TrEMBL
    Q5DU13
    Conserved Domains (1) summary
    pfam14893
    Location:1327
    PNMA