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Samd15 sterile alpha motif domain containing 15 [ Mus musculus (house mouse) ]

Gene ID: 238333, updated on 5-Mar-2024

Summary

Official Symbol
Samd15provided by MGI
Official Full Name
sterile alpha motif domain containing 15provided by MGI
Primary source
MGI:MGI:2685109
See related
Ensembl:ENSMUSG00000090812 AllianceGenome:MGI:2685109
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm263
Summary
Orthologous to human SAMD15 (sterile alpha motif domain containing 15). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 4.2), cortex adult (RPKM 0.3) and 3 other tissues See more
Orthologs
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Genomic context

Location:
12 D2; 12 41.4 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (87247240..87260315)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (87194484..87213541)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene protein-O-mannosyltransferase 2 Neighboring gene STARR-positive B cell enhancer ABC_E10770 Neighboring gene STARR-positive B cell enhancer ABC_E10771 Neighboring gene glutathione transferase zeta 1 (maleylacetoacetate isomerase) Neighboring gene predicted gene 6566 Neighboring gene transmembrane p24 trafficking protein 8 Neighboring gene STARR-positive B cell enhancer ABC_E9041 Neighboring gene NADP+ dependent oxidoreductase domain containing 1 Neighboring gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog Neighboring gene AHA1, activator of heat shock protein ATPase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
sterile alpha motif domain-containing protein 15
Names
SAM domain-containing protein 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290288.2NP_001277217.1  sterile alpha motif domain-containing protein 15

    See identical proteins and their annotated locations for NP_001277217.1

    Status: VALIDATED

    Source sequence(s)
    AC132609, CJ060055
    Consensus CDS
    CCDS70409.1
    UniProtKB/Swiss-Prot
    F6XZJ7
    Related
    ENSMUSP00000138551.2, ENSMUST00000182869.2
    Conserved Domains (2) summary
    cd09530
    Location:478544
    SAM_Samd14; SAM domain of Samd14 subfamily
    smart00454
    Location:479533
    SAM; Sterile alpha motif

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    87247240..87260315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004937499.1 RNA Sequence