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Sowaha sosondowah ankyrin repeat domain family member A [ Mus musculus (house mouse) ]

Gene ID: 237761, updated on 5-Mar-2024

Summary

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Official Symbol
Sowahaprovided by MGI
Official Full Name
sosondowah ankyrin repeat domain family member Aprovided by MGI
Primary source
MGI:MGI:2687280
See related
Ensembl:ENSMUSG00000044352 AllianceGenome:MGI:2687280
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ankrd43; A830006N08Rik
Summary
Is expressed in brain; liver lobe; and olfactory epithelium. Orthologous to human SOWAHA (sosondowah ankyrin repeat domain family member A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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Location:
11 B1.3; 11 31.95 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (53367405..53371022, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (53476578..53480195, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 10447 Neighboring gene shroom family member 1 Neighboring gene predicted gene 9945 Neighboring gene predicted gene, 19835 Neighboring gene ribosomal protein L9, pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular specification and patterning of progenitor cells in the lateral and medial ganglionic eminences. Tucker ES, et al. J Neurosci, 2008 Sep 17. PMID 18799682, Free PMC Article
  2. Regulation of otocyst patterning by Tbx2 and Tbx3 is required for inner ear morphogenesis in the mouse. Kaiser M, et al. Development, 2021 Apr 15. PMID 33795231
  3. Gene expression analysis of the late embryonic mouse cerebral cortex using DNA microarray: identification of several region- and layer-specific genes. Funatsu N, et al. Cereb Cortex, 2004 Sep. PMID 15142957
  4. A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Thompson CL, et al. Neuron, 2014 Jul 16. PMID 24952961, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein SOWAHA
Names
ankyrin repeat domain 43
ankyrin repeat domain-containing protein 43
protein sosondowah homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183173.2 → NP_898996.2  ankyrin repeat domain-containing protein SOWAHA precursor

    See identical proteins and their annotated locations for NP_898996.2

    Status: VALIDATED

    Source sequence(s)
    AI451247, AL596095
    Consensus CDS
    CCDS24681.2
    UniProtKB/Swiss-Prot
    Q149C7, Q8BLS7
    Related
    ENSMUSP00000100561.3, ENSMUST00000104955.4
    Conserved Domains (3) summary
    cd00204
    Location:345 → 437
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam13637
    Location:345 → 404
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:344 → 381
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    53367405..53371022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BLS7.2 GenPept UniProtKB/Swiss-Prot:Q8BLS7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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