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Slc22a29 solute carrier family 22. member 29 [ Mus musculus (house mouse) ]

Gene ID: 236293, updated on 30-Apr-2024

Summary

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Official Symbol
Slc22a29provided by MGI
Official Full Name
solute carrier family 22. member 29provided by MGI
Primary source
MGI:MGI:3605624
See related
Ensembl:ENSMUSG00000075044 AllianceGenome:MGI:3605624
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D630002G06Rik
Summary
Predicted to enable anion:anion antiporter activity; short-chain fatty acid transmembrane transporter activity; and sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in organic anion transport. Predicted to be located in basolateral plasma membrane. Is expressed in embryo; liver; metanephros; and testis. Orthologous to several human genes including SLC22A25 (solute carrier family 22 member 25) and SLC22A9 (solute carrier family 22 member 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in kidney adult (RPKM 8.6) and liver adult (RPKM 4.6) See more
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Genomic context

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Location:
19 A; 19 5.4 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (8137532..8230739, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (8160168..8253375, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene calpastatin pseudogene Neighboring gene solute carrier family 22, member 28 Neighboring gene STARR-seq mESC enhancer starr_45475 Neighboring gene predicted gene, 41804 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene calpastatin pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of a large cluster of SLC22 transporter genes, including novel USTs, reveals species-specific amplification of subsets of family members. Wu W, et al. Physiol Genomics, 2009 Jul 9. PMID 19417012, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC143567

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables organic anion transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
  
enables short-chain fatty acid transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
  
enables sodium-independent organic anion transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in organic anion transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in basolateral plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
solute carrier family 22. member 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347426.1 → NP_001334355.1  solute carrier family 22. member 29 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC110913
    Consensus CDS
    CCDS84413.1
    UniProtKB/TrEMBL
    Q687I5
    Related
    ENSMUST00000140910.8

  2. NM_172776.3 → NP_766364.1  solute carrier family 22. member 29 isoform 1

    See identical proteins and their annotated locations for NP_766364.1

    Status: VALIDATED

    Source sequence(s)
    AC110913, AK052597
    Consensus CDS
    CCDS29535.1
    UniProtKB/TrEMBL
    Q687I4, Q8BWG6
    Related
    ENSMUSP00000108923.3, ENSMUST00000113298.9
    Conserved Domains (1) summary
    cd17374
    Location:109 → 515
    MFS_OAT; Organic anion transporters of the Major Facilitator Superfamily of transporters

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    8137532..8230739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527061.1 → XP_006527124.1  solute carrier family 22. member 29 isoform X3

    Conserved Domains (1) summary
    cl28910
    Location:1 → 308
    MFS; Major Facilitator Superfamily

  2. XM_006527060.4 → XP_006527123.1  solute carrier family 22. member 29 isoform X2

    UniProtKB/TrEMBL
    Q687I5
    Conserved Domains (1) summary
    cl28910
    Location:109 → 454
    MFS; Major Facilitator Superfamily

  3. XM_011247245.3 → XP_011245547.1  solute carrier family 22. member 29 isoform X1

    See identical proteins and their annotated locations for XP_011245547.1

    UniProtKB/TrEMBL
    Q687I4, Q8BWG6
    Conserved Domains (1) summary
    cd17374
    Location:109 → 515
    MFS_OAT; Organic anion transporters of the Major Facilitator Superfamily of transporters
Nucleotide Protein Strain
Heading Accession and Version

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