U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm13238 predicted gene 13238 [ Mus musculus (house mouse) ]

Gene ID: 236069, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Gm13238provided by MGI
Official Full Name
predicted gene 13238provided by MGI
Gene description
carnitine deficiency-associated gene expressed in ventricle 3 pseudogene
Primary source
MGI:MGI:3652104
See related
Ensembl:ENSMUSG00000096233 AllianceGenome:MGI:3652104
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
4 E1; 4 78.26 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145563789..145564562)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (145837219..145837992)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 15 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145371246-145371546 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145375889-145376189 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145380924-145381225 Neighboring gene tousled-like kinase 2 pseudogene Neighboring gene ZNF41, pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145411896-145412197 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145414700-145415001 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145418046-145418347 Neighboring gene STARR-seq mESC enhancer starr_12036 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145446019-145446319 Neighboring gene STARR-seq mESC enhancer starr_12037 Neighboring gene STARR-seq mESC enhancer starr_12038 Neighboring gene STARR-seq mESC enhancer starr_12039 Neighboring gene STARR-seq mESC enhancer starr_12040 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145479925-145480225 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145482093-145482393 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145483669-145483970 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146017850-146018151 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Other Names

  • carnitine deficiency-associated gene expressed in ventricle 3 pseudogene
  • protein CDV3 pseudogene

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033612.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL929465
    Related
    ENSMUST00000117655.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    145563789..145564562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.