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Il17c interleukin 17C [ Mus musculus (house mouse) ]

Gene ID: 234836, updated on 11-Apr-2024

Summary

Official Symbol
Il17cprovided by MGI
Official Full Name
interleukin 17Cprovided by MGI
Primary source
MGI:MGI:2446486
See related
Ensembl:ENSMUSG00000046108 AllianceGenome:MGI:2446486
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
IL-17C
Summary
Enables cytokine activity. Acts upstream of or within neutrophil differentiation and positive regulation of cytokine production involved in inflammatory response. Located in extracellular space. Orthologous to human IL17C (interleukin 17C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 1.3), thymus adult (RPKM 0.9) and 22 other tissues See more
Orthologs
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Genomic context

Location:
8 E1; 8 71.03 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (123147912..123150820)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (122422020..122423639)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6697 Neighboring gene thyrotropin releasing hormone receptor 2 Neighboring gene STARR-positive B cell enhancer ABC_E6698 Neighboring gene zinc finger CCCH-type containing 18 Neighboring gene STARR-positive B cell enhancer ABC_E9324 Neighboring gene STARR-positive B cell enhancer ABC_E8269 Neighboring gene STARR-positive B cell enhancer ABC_E1776 Neighboring gene cytochrome b-245, alpha polypeptide Neighboring gene predicted gene, 53466 Neighboring gene mevalonate (diphospho) decarboxylase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General protein information

Preferred Names
interleukin-17C
Names
cytokine CX2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145834.4NP_665833.4  interleukin-17C

    Status: VALIDATED

    Source sequence(s)
    BC145853
    Consensus CDS
    CCDS90473.1
    UniProtKB/Swiss-Prot
    A6H6F0, Q8K4C5
    UniProtKB/TrEMBL
    A0A0R4J0P4
    Related
    ENSMUSP00000056008.4, ENSMUST00000050963.4
    Conserved Domains (1) summary
    pfam06083
    Location:88176
    IL17; Interleukin-17

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    123147912..123150820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153977.1XP_036009870.1  interleukin-17C isoform X1

    UniProtKB/Swiss-Prot
    A6H6F0, Q8K4C5
    Conserved Domains (1) summary
    pfam06083
    Location:108196
    IL17; Interleukin-17