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Ccdc102a coiled-coil domain containing 102A [ Mus musculus (house mouse) ]

Gene ID: 234582, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc102aprovided by MGI
Official Full Name
coiled-coil domain containing 102Aprovided by MGI
Primary source
MGI:MGI:2686927
See related
Ensembl:ENSMUSG00000063605 AllianceGenome:MGI:2686927
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm586
Summary
Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in limb E14.5 (RPKM 18.3), ovary adult (RPKM 17.2) and 23 other tissues See more
Orthologs
human all
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Genomic context

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Location:
8 C5; 8 46.99 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (95629497..95644726, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (94902869..94918098, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cytokine induced apoptosis inhibitor 1 Neighboring gene STARR-positive B cell enhancer ABC_E10518 Neighboring gene coenzyme Q9 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide C Neighboring gene docking protein 4 Neighboring gene STARR-positive B cell enhancer mm9_chr8:97441323-97441623 Neighboring gene adhesion G protein-coupled receptor G5 Neighboring gene STARR-positive B cell enhancer ABC_E8258 Neighboring gene STARR-positive B cell enhancer ABC_E3795 Neighboring gene predicted gene, 30968 Neighboring gene adhesion G protein-coupled receptor G1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A male with unilateral microphthalmia reveals a role for TMX3 in eye development. Chao R, et al. PLoS One, 2010 May 11. PMID 20485507, Free PMC Article
  2. Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways. Sang L, et al. Cell, 2011 May 13. PMID 21565611, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 102A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033533.3 → NP_001028705.2  coiled-coil domain-containing protein 102A

    See identical proteins and their annotated locations for NP_001028705.2

    Status: VALIDATED

    Source sequence(s)
    BB613877, BC107374, BF020220
    Consensus CDS
    CCDS22551.1
    UniProtKB/Swiss-Prot
    A0AUL1, Q3B7Y4, Q3TMW1
    UniProtKB/TrEMBL
    A4FUJ5, B2RTE5
    Related
    ENSMUSP00000077107.6, ENSMUST00000077955.6
    Conserved Domains (1) summary
    COG1196
    Location:242 → 516
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    95629497..95644726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011248354.4 → XP_011246656.1  coiled-coil domain-containing protein 102A isoform X1

    See identical proteins and their annotated locations for XP_011246656.1

    UniProtKB/Swiss-Prot
    A0AUL1, Q3B7Y4, Q3TMW1
    UniProtKB/TrEMBL
    A4FUJ5, B2RTE5
    Conserved Domains (1) summary
    COG1196
    Location:242 → 516
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3TMW1.2 GenPept UniProtKB/Swiss-Prot:Q3TMW1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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