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Thumpd1 THUMP domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 233802, updated on 11-Apr-2024

Summary

Official Symbol
Thumpd1provided by MGI
Official Full Name
THUMP domain containing 1provided by MGI
Primary source
MGI:MGI:2444479
See related
Ensembl:ENSMUSG00000030942 AllianceGenome:MGI:2444479
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6330575P11Rik
Summary
Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Orthologous to human THUMPD1 (THUMP domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 15.9), CNS E18 (RPKM 14.5) and 28 other tissues See more
Orthologs
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Genomic context

Location:
7 F2; 7 64.13 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (119314316..119322842, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (119715093..119723619, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39079 Neighboring gene acyl-CoA synthetase medium-chain family member 1 Neighboring gene STARR-seq mESC enhancer starr_20036 Neighboring gene acyl-CoA synthetase medium-chain family member 4 Neighboring gene predicted gene, 39080 Neighboring gene protein phosphatase 1 catalytic subunit gamma B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC7161

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in tRNA modification IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
THUMP domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145585.3NP_663560.1  THUMP domain-containing protein 1

    See identical proteins and their annotated locations for NP_663560.1

    Status: VALIDATED

    Source sequence(s)
    AC164158, AI851052, AK152912, BY031969, CO042524
    Consensus CDS
    CCDS21785.1
    UniProtKB/Swiss-Prot
    Q3U6Y3, Q99J36
    Related
    ENSMUSP00000033236.7, ENSMUST00000033236.9
    Conserved Domains (1) summary
    cd11717
    Location:45254
    THUMP_THUMPD1_like; THUMP domain-containing protein 1-like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    119314316..119322842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)