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Vsig10 V-set and immunoglobulin domain containing 10 [ Mus musculus (house mouse) ]

Gene ID: 231668, updated on 5-Mar-2024

Summary

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Official Symbol
Vsig10provided by MGI
Official Full Name
V-set and immunoglobulin domain containing 10provided by MGI
Primary source
MGI:MGI:2448533
See related
Ensembl:ENSMUSG00000066894 AllianceGenome:MGI:2448533
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Orthologous to human VSIG10 (V-set and immunoglobulin domain containing 10). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in colon adult (RPKM 29.0), large intestine adult (RPKM 13.0) and 15 other tissues See more
Orthologs
human all
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Genomic context

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See Vsig10 in Genome Data Viewer
Location:
5 F; 5 56.88 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (117457331..117493071)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (117318476..117355007)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene cDNA sequence BC051077 Neighboring gene predicted gene, 52828 Neighboring gene predicted gene 10399 Neighboring gene 60S ribosomal protein L27a pseudogene Neighboring gene STARR-seq mESC enhancer starr_14176 Neighboring gene predicted gene, 42012 Neighboring gene WD repeat and SOCS box-containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
V-set and immunoglobulin domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033311.3 → NP_001028483.2  V-set and immunoglobulin domain-containing protein 10 precursor

    See identical proteins and their annotated locations for NP_001028483.2

    Status: VALIDATED

    Source sequence(s)
    AC110234, AK140339, BY082706, BY668205, CJ057085
    Consensus CDS
    CCDS19603.2
    UniProtKB/Swiss-Prot
    D3YX43
    UniProtKB/TrEMBL
    E9PVW4
    Related
    ENSMUSP00000107598.2, ENSMUST00000111967.8
    Conserved Domains (3) summary
    cd00096
    Location:345 → 418
    Ig; Immunoglobulin domain
    smart00410
    Location:341 → 421
    IG_like; Immunoglobulin like
    cl11960
    Location:47 → 135
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    117457331..117493071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D3YX43.2 GenPept UniProtKB/Swiss-Prot:D3YX43

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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