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9130230L23Rik RIKEN cDNA 9130230L23 gene [ Mus musculus (house mouse) ]

Gene ID: 231253, updated on 8-Feb-2024

Summary

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Official Symbol
9130230L23Rikprovided by MGI
Official Full Name
RIKEN cDNA 9130230L23 geneprovided by MGI
Primary source
MGI:MGI:3041166
See related
Ensembl:ENSMUSG00000054598 AllianceGenome:MGI:3041166
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in genital fat pad adult (RPKM 10.2), large intestine adult (RPKM 2.0) and 4 other tissues See more
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Genomic context

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See 9130230L23Rik in Genome Data Viewer
Location:
5 C3.1; 5 33.89 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (66145271..66161628, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (65987928..66004285, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:66320476-66320836 Neighboring gene predicted gene, 32556 Neighboring gene STARR-positive B cell enhancer ABC_E1301 Neighboring gene STARR-positive B cell enhancer ABC_E9642 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:66347227-66347446 Neighboring gene cholinergic receptor, nicotinic, alpha polypeptide 9 Neighboring gene STARR-positive B cell enhancer ABC_E6335 Neighboring gene STARR-seq mESC enhancer starr_13277 Neighboring gene STARR-seq mESC enhancer starr_13278 Neighboring gene predicted gene, 40310 Neighboring gene RNA binding motif protein 47 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:66466455-66466644 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:66466709-66466896 Neighboring gene STARR-seq mESC enhancer starr_13283 Neighboring gene STARR-seq mESC enhancer starr_13285 Neighboring gene predicted gene, 26725

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027961.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC115293
    Related
    ENSMUST00000201351.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    66145271..66161628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177679.2: Suppressed sequence

    Description
    NM_177679.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and no support for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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