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CUL9 cullin 9 [ Homo sapiens (human) ]

Gene ID: 23113, updated on 3-Apr-2024

Summary

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Official Symbol
CUL9provided by HGNC
Official Full Name
cullin 9provided by HGNC
Primary source
HGNC:HGNC:15982
See related
Ensembl:ENSG00000112659 MIM:607489; AllianceGenome:HGNC:15982
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PARC; H7AP1
Summary
Predicted to enable several functions, including ATP binding activity; metal ion binding activity; and ubiquitin protein ligase binding activity. Involved in microtubule cytoskeleton organization; protein ubiquitination; and regulation of mitotic nuclear division. Located in cytosol. Part of cullin-RING ubiquitin ligase complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 6.1), skin (RPKM 5.9) and 25 other tissues See more
Orthologs
mouse all
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Genomic context

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See CUL9 in Genome Data Viewer
Location:
6p21.1
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (43182196..43224587)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (43010969..43053382)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (43149934..43192325)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17218 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:43049243-43049446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43050481-43051047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43051048-43051613 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43057365-43057958 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:43057959-43058553 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43058554-43059147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24591 Neighboring gene protein tyrosine kinase 7 (inactive) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43086921-43087840 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43087841-43088760 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43099803-43100304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43100305-43100804 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24592 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43138211-43138940 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17219 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43139967-43140935 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43145601-43146102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43146103-43146602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24595 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17221 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:43154118-43155317 Neighboring gene serum response factor Neighboring gene MPRA-validated peak5812 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43190560-43191097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24596 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17222 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:43197001-43197500 Neighboring gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 Neighboring gene tau tubulin kinase 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:43239819-43240068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43245015-43245670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43245671-43246325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43254414-43255266

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Killing the Killer: PARC/CUL9 promotes cell survival by destroying cytochrome C. Lopez J, et al. Sci Signal, 2014 Jul 15. PMID 25028716
  2. Calpain-mediated processing of p53-associated parkin-like cytoplasmic protein (PARC) affects chemosensitivity of human ovarian cancer cells by promoting p53 subcellular trafficking. Woo MG, et al. J Biol Chem, 2012 Feb 3. PMID 22117079, Free PMC Article
  3. Activation of p53-dependent responses in tumor cells treated with a PARC-interacting peptide. Vitali R, et al. Biochem Biophys Res Commun, 2008 Apr 4. PMID 18230339, Free PMC Article
  4. The conserved CPH domains of Cul7 and PARC are protein-protein interaction modules that bind the tetramerization domain of p53. Kaustov L, et al. J Biol Chem, 2007 Apr 13. PMID 17298945
  5. A novel p53-binding domain in CUL7. Kasper JS, et al. Biochem Biophys Res Commun, 2006 Sep 15. PMID 16875676

See all (53) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A proteomics approach for the identification of cullin-9 (CUL9) related signaling pathways in induced pluripotent stem cell models.
    Title: A proteomics approach for the identification of cullin-9 (CUL9) related signaling pathways in induced pluripotent stem cell models.
  2. Results in U2OS cells demonstrate that the functions of CUL9 in regulating cell proliferation and maintaining genomic integrity are mainly mediated by p53, and that CUL9 is a critical p53 activator.
    Title: Cytoplasmic E3 ubiquitin ligase CUL9 controls cell proliferation, senescence, apoptosis and genome integrity through p53.
  3. PARC-mediated ubiquitination and degradation of Cyt c is a strategy engaged by both neurons and cancer cells to prevent apoptosis during conditions of mitochondrial stress.
    Title: The E3 ligase PARC mediates the degradation of cytosolic cytochrome c to promote survival in neurons and cancer cells.
  4. PARC (also known as CUL9) was found to be the ubiquitin ligase responsible for the ubiquitination and proteasomal degradation of cytochrome c, thus promoting cell survival.
    Title: Killing the Killer: PARC/CUL9 promotes cell survival by destroying cytochrome C.
  5. the regulation of p53 subcellular localization and apoptosis by PARC as a contributing factor in CDDP resistance in OVCA cells and Ca(2+)/calpain in PARC post-translational processing and chemosensitivity.
    Title: Calpain-mediated processing of p53-associated parkin-like cytoplasmic protein (PARC) affects chemosensitivity of human ovarian cancer cells by promoting p53 subcellular trafficking.
  6. Observational study of gene-disease association. (HuGE Navigator)
    Title: Association of genetic variants with hemorrhagic stroke in Japanese individuals.
  7. These studies suggest that PARC-interacting peptides are promising candidates for the enhancement of p53-dependent apoptosis in tumors with wt cytoplasmic p53.
    Title: Activation of p53-dependent responses in tumor cells treated with a PARC-interacting peptide.
  8. PARC and CUL7 subcomplexes exhibit E3 ubiquitin ligase activity in vitro.
    Title: PARC and CUL7 form atypical cullin RING ligase complexes.
  9. FUBP1 is an authentic substrate of Parkin that might play an important role in development of Parkinson disease pathology along with aminoacyl-tRNA synthetase interacting multifunctional protein type 2
    Title: Identification of far upstream element-binding protein-1 as an authentic Parkin substrate.
  10. CPH domain interaction surface of p53 resides in the tetramerization domain and is formed by residues contributed by at least two subunits
    Title: The conserved CPH domains of Cul7 and PARC are protein-protein interaction modules that bind the tetramerization domain of p53.
Submit: New GeneRIF Correction See all GeneRIFs (11)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • DKFZp686G1042, DKFZp686P2024

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin protein ligase activity TAS
Traceable Author Statement
more info
  
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein ubiquitination TAS
Traceable Author Statement
more info
  
involved_in regulation of mitotic nuclear division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cullin-RING ubiquitin ligase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
cullin-9
Names
CUL-9
UbcH7-associated protein 1
p53-associated parkin-like cytoplasmic protein
parkin-like cytoplasmic p53 binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015089.4 → NP_055904.1  cullin-9

    See identical proteins and their annotated locations for NP_055904.1

    Status: VALIDATED

    Source sequence(s)
    AJ318215, AL133375, BC002879, KF458162
    Consensus CDS
    CCDS4890.1
    UniProtKB/Swiss-Prot
    O75188, Q5TCY3, Q68CP2, Q68D92, Q8IWT3, Q8N3W9, Q9BU56
    UniProtKB/TrEMBL
    E9PEZ1
    Related
    ENSP00000252050.4, ENST00000252050.9
    Conserved Domains (8) summary
    smart00182
    Location:1593 → 1764
    CULLIN; Cullin
    smart00647
    Location:2141 → 2203
    IBR; In Between Ring fingers
    pfam01485
    Location:2234 → 2272
    IBR; IBR domain, a half RING-finger domain
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam13639
    Location:2068 → 2117
    zf-RING_2; Ring finger domain
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1167 → 1297
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1864 → 1944
    Cullin_Nedd8; Cullin protein neddylation domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    43182196..43224587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017010589.2 → XP_016866078.1  cullin-9 isoform X1

    UniProtKB/TrEMBL
    E9PEZ1
    Conserved Domains (8) summary
    smart00182
    Location:1642 → 1813
    CULLIN; Cullin
    smart00647
    Location:2190 → 2252
    IBR; In Between Ring fingers
    pfam01485
    Location:2283 → 2321
    IBR; IBR domain, a half RING-finger domain
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam13639
    Location:2117 → 2166
    zf-RING_2; Ring finger domain
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1167 → 1297
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1913 → 1993
    Cullin_Nedd8; Cullin protein neddylation domain

  2. XM_011514423.3 → XP_011512725.1  cullin-9 isoform X1

    See identical proteins and their annotated locations for XP_011512725.1

    UniProtKB/TrEMBL
    E9PEZ1
    Conserved Domains (8) summary
    smart00182
    Location:1642 → 1813
    CULLIN; Cullin
    smart00647
    Location:2190 → 2252
    IBR; In Between Ring fingers
    pfam01485
    Location:2283 → 2321
    IBR; IBR domain, a half RING-finger domain
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam13639
    Location:2117 → 2166
    zf-RING_2; Ring finger domain
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1167 → 1297
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1913 → 1993
    Cullin_Nedd8; Cullin protein neddylation domain

  3. XM_047418475.1 → XP_047274431.1  cullin-9 isoform X3

    UniProtKB/Swiss-Prot
    O75188, Q5TCY3, Q68CP2, Q68D92, Q8IWT3, Q8N3W9, Q9BU56

  4. XM_047418478.1 → XP_047274434.1  cullin-9 isoform X6

  5. XM_011514422.2 → XP_011512724.1  cullin-9 isoform X1

    See identical proteins and their annotated locations for XP_011512724.1

    UniProtKB/TrEMBL
    E9PEZ1
    Conserved Domains (8) summary
    smart00182
    Location:1642 → 1813
    CULLIN; Cullin
    smart00647
    Location:2190 → 2252
    IBR; In Between Ring fingers
    pfam01485
    Location:2283 → 2321
    IBR; IBR domain, a half RING-finger domain
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam13639
    Location:2117 → 2166
    zf-RING_2; Ring finger domain
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1167 → 1297
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1913 → 1993
    Cullin_Nedd8; Cullin protein neddylation domain

  6. XM_011514424.2 → XP_011512726.1  cullin-9 isoform X2

    UniProtKB/TrEMBL
    E9PEZ1
    Conserved Domains (8) summary
    smart00182
    Location:1615 → 1786
    CULLIN; Cullin
    smart00647
    Location:2163 → 2225
    IBR; In Between Ring fingers
    pfam01485
    Location:2256 → 2294
    IBR; IBR domain, a half RING-finger domain
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam13639
    Location:2090 → 2139
    zf-RING_2; Ring finger domain
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1140 → 1270
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1886 → 1966
    Cullin_Nedd8; Cullin protein neddylation domain

  7. XM_047418476.1 → XP_047274432.1  cullin-9 isoform X4

  8. XM_011514425.2 → XP_011512727.1  cullin-9 isoform X5

    UniProtKB/TrEMBL
    E9PEZ1
    Conserved Domains (8) summary
    smart00182
    Location:1532 → 1703
    CULLIN; Cullin
    smart00647
    Location:2080 → 2142
    IBR; In Between Ring fingers
    pfam01485
    Location:2173 → 2211
    IBR; IBR domain, a half RING-finger domain
    pfam11515
    Location:366 → 419
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam13639
    Location:2007 → 2056
    zf-RING_2; Ring finger domain
    pfam16195
    Location:483 → 528
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1057 → 1187
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1803 → 1883
    Cullin_Nedd8; Cullin protein neddylation domain

  9. XM_047418479.1 → XP_047274435.1  cullin-9 isoform X7

  10. XM_047418477.1 → XP_047274433.1  cullin-9 isoform X6

  11. XM_047418480.1 → XP_047274436.1  cullin-9 isoform X9

  12. XM_011514426.2 → XP_011512728.1  cullin-9 isoform X8

    UniProtKB/TrEMBL
    E9PEZ1
    Conserved Domains (8) summary
    smart00182
    Location:1642 → 1813
    CULLIN; Cullin
    smart00647
    Location:2190 → 2252
    IBR; In Between Ring fingers
    pfam01485
    Location:2283 → 2321
    IBR; IBR domain, a half RING-finger domain
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam13639
    Location:2117 → 2166
    zf-RING_2; Ring finger domain
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1167 → 1297
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1913 → 1993
    Cullin_Nedd8; Cullin protein neddylation domain

  13. XM_047418481.1 → XP_047274437.1  cullin-9 isoform X11

  14. XM_011514428.2 → XP_011512730.1  cullin-9 isoform X13

    Conserved Domains (4) summary
    smart00182
    Location:1642 → 1813
    CULLIN; Cullin
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1167 → 1297
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

  15. XM_047418482.1 → XP_047274438.1  cullin-9 isoform X14

  16. XM_011514430.2 → XP_011512732.1  cullin-9 isoform X15

    Conserved Domains (3) summary
    pfam11515
    Location:366 → 440
    Cul7; Mouse development and cellular proliferation protein Cullin-7
    pfam16195
    Location:593 → 638
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:1167 → 1297
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

  17. XM_047418483.1 → XP_047274439.1  cullin-9 isoform X15

  18. XM_011514427.1 → XP_011512729.1  cullin-9 isoform X10

    UniProtKB/TrEMBL
    E9PEZ1
    Conserved Domains (6) summary
    smart00182
    Location:1171 → 1342
    CULLIN; Cullin
    smart00647
    Location:1719 → 1781
    IBR; In Between Ring fingers
    pfam01485
    Location:1812 → 1850
    IBR; IBR domain, a half RING-finger domain
    pfam16195
    Location:122 → 167
    UBA2_C; SUMO-activating enzyme subunit 2 C-terminus
    cl02148
    Location:696 → 826
    APC10-like; APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination
    cl11186
    Location:1442 → 1522
    Cullin_Nedd8; Cullin protein neddylation domain

  19. XM_017010590.1 → XP_016866079.1  cullin-9 isoform X12

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    43010969..43053382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054354821.1 → XP_054210796.1  cullin-9 isoform X1

  2. XM_054354824.1 → XP_054210799.1  cullin-9 isoform X3

  3. XM_054354828.1 → XP_054210803.1  cullin-9 isoform X6

  4. XM_054354820.1 → XP_054210795.1  cullin-9 isoform X1

  5. XM_054354823.1 → XP_054210798.1  cullin-9 isoform X2

  6. XM_054354825.1 → XP_054210800.1  cullin-9 isoform X4

  7. XM_054354826.1 → XP_054210801.1  cullin-9 isoform X5

  8. XM_054354829.1 → XP_054210804.1  cullin-9 isoform X7

  9. XM_054354827.1 → XP_054210802.1  cullin-9 isoform X6

  10. XM_054354831.1 → XP_054210806.1  cullin-9 isoform X9

  11. XM_054354830.1 → XP_054210805.1  cullin-9 isoform X8

  12. XM_054354833.1 → XP_054210808.1  cullin-9 isoform X11

  13. XM_054354835.1 → XP_054210810.1  cullin-9 isoform X13

  14. XM_054354836.1 → XP_054210811.1  cullin-9 isoform X14

  15. XM_054354838.1 → XP_054210813.1  cullin-9 isoform X15

  16. XM_054354837.1 → XP_054210812.1  cullin-9 isoform X15

  17. XM_054354822.1 → XP_054210797.1  cullin-9 isoform X1

  18. XM_054354832.1 → XP_054210807.1  cullin-9 isoform X10

  19. XM_054354834.1 → XP_054210809.1  cullin-9 isoform X12

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8IWT3.2 GenPept UniProtKB/Swiss-Prot:Q8IWT3

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