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Dnajc5g DnaJ heat shock protein family (Hsp40) member C5 gamma [ Mus musculus (house mouse) ]

Gene ID: 231098, updated on 5-Mar-2024

Summary

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Official Symbol
Dnajc5gprovided by MGI
Official Full Name
DnaJ heat shock protein family (Hsp40) member C5 gammaprovided by MGI
Primary source
MGI:MGI:3045263
See related
Ensembl:ENSMUSG00000053856 AllianceGenome:MGI:3045263
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4922503E23Rik
Summary
Is expressed in brain; genitourinary system; and submandibular gland. Orthologous to human DNAJC5G (DnaJ heat shock protein family (Hsp40) member C5 gamma). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 67.7) See more
Orthologs
human all
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Genomic context

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Location:
5 B1; 5 17.03 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (31265637..31269870)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (31108293..31112526)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38601 Neighboring gene solute carrier family 30 (zinc transporter), member 3 Neighboring gene predicted gene 9924 Neighboring gene STARR-seq mESC enhancer starr_12766 Neighboring gene tripartite motif-containing 54 Neighboring gene predicted gene 15469 Neighboring gene urocortin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Systematic screening for skin, hair, and nail abnormalities in a large-scale knockout mouse program. Sundberg JP, et al. PLoS One, 2017. PMID 28700664, Free PMC Article
  2. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Homology

Clone Names

  • MGC107182

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
dnaJ homolog subfamily C member 5G
Names
DnaJ (Hsp40) homolog, subfamily C, member 5 gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347324.1 → NP_001334253.1  dnaJ homolog subfamily C member 5G isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate exons compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC109608
    Consensus CDS
    CCDS84862.1
    UniProtKB/TrEMBL
    A0A087WQK2
    Related
    ENSMUSP00000144137.2, ENSMUST00000201740.4

  2. NM_177677.3 → NP_808345.1  dnaJ homolog subfamily C member 5G isoform 1

    See identical proteins and their annotated locations for NP_808345.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK076638
    Consensus CDS
    CCDS19172.1
    UniProtKB/TrEMBL
    Q8C632
    Related
    ENSMUSP00000064587.2, ENSMUST00000066544.5
    Conserved Domains (2) summary
    COG0484
    Location:16 → 86
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:17 → 79
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    31265637..31269870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240723.2 → XP_011239025.1  dnaJ homolog subfamily C member 5G isoform X1

    Conserved Domains (1) summary
    COG0484
    Location:16 → 86
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein Strain
Heading Accession and Version

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