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Iqca1l IQ motif containing with AAA domain 1 like [ Mus musculus (house mouse) ]

Gene ID: 231045, updated on 5-Mar-2024

Summary

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Official Symbol
Iqca1lprovided by MGI
Official Full Name
IQ motif containing with AAA domain 1 likeprovided by MGI
Primary source
MGI:MGI:3045319
See related
Ensembl:ENSMUSG00000038199 AllianceGenome:MGI:3045319
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Iqca1p1; 4931409K22Rik
Summary
Predicted to enable ATP binding activity and ATP hydrolysis activity. Orthologous to human IQCA1L (IQ motif containing with AAA domain 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 35.8) See more
Orthologs
human all
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Genomic context

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See Iqca1l in Genome Data Viewer
Location:
5 A3; 5 11.93 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (24748432..24760467, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (24543434..24555469, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene gastrulation brain homeobox 1 Neighboring gene STARR-positive B cell enhancer mm9_chr5:24035915-24036216 Neighboring gene ankyrin repeat and SOCS box-containing 10 Neighboring gene ATP-binding cassette, sub-family F member 2 Neighboring gene STARR-positive B cell enhancer ABC_E6314 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis of mouse stem cells and early embryos. Sharov AA, et al. PLoS Biol, 2003 Dec. PMID 14691545, Free PMC Article
  2. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
IQ and AAA domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177676.6 → NP_808344.3  IQ and AAA domain-containing protein 1-like

    See identical proteins and their annotated locations for NP_808344.3

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the functional protein.
    Source sequence(s)
    AK029839, AV271477, BC145792, CN725168
    Consensus CDS
    CCDS51435.1
    UniProtKB/Swiss-Prot
    A6H690, B9EHI7, E9QN17, Q8CDM7
    Related
    ENSMUSP00000085642.6, ENSMUST00000088302.10
    Conserved Domains (2) summary
    COG0464
    Location:566 → 745
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam00004
    Location:568 → 701
    AAA; ATPase family associated with various cellular activities (AAA)

RNA

  1. NR_033188.1 RNA Sequence

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) uses an alternate splice site and retains an intron, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK029839, AV271477, BC145792, CN725168
    Related
    ENSMUST00000200634.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    24748432..24760467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001784669.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6H690.3 GenPept UniProtKB/Swiss-Prot:A6H690

Gene LinkOut

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