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Il22ra1 interleukin 22 receptor, alpha 1 [ Mus musculus (house mouse) ]

Gene ID: 230828, updated on 21-Apr-2024

Summary

Official Symbol
Il22ra1provided by MGI
Official Full Name
interleukin 22 receptor, alpha 1provided by MGI
Primary source
MGI:MGI:2663588
See related
Ensembl:ENSMUSG00000037157 AllianceGenome:MGI:2663588
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Il22r; IL-22R; 9130219A07Rik
Summary
Enables interleukin-20 binding activity. Acts upstream of or within defense response to Gram-negative bacterium. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human IL22RA1 (interleukin 22 receptor subunit alpha 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in small intestine adult (RPKM 29.4), large intestine adult (RPKM 23.2) and 3 other tissues See more
Orthologs
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Genomic context

Location:
4 D3; 4 67.99 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (135455470..135482694)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (135728159..135755383)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene interferon lambda receptor 1 Neighboring gene proteasome (prosome, macropain) subunit, alpha type 5 pseudogene Neighboring gene S-phase kinase-associated protein 1A pseudogene Neighboring gene myomesin family, member 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (5)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cytokine receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables interleukin-20 binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables interleukin-22 receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
interleukin-22 receptor subunit alpha-1
Names
IL-22 receptor subunit alpha-1
IL-22R-alpha-1
IL-22RA1
interleukin-22 receptor alpha chain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178257.2NP_839988.1  interleukin-22 receptor subunit alpha-1 precursor

    See identical proteins and their annotated locations for NP_839988.1

    Status: VALIDATED

    Source sequence(s)
    AK141289, AK162333, AL662911
    Consensus CDS
    CCDS18789.1
    UniProtKB/Swiss-Prot
    B2RU51, Q3URP9, Q80XZ4
    Related
    ENSMUSP00000099605.4, ENSMUST00000102546.4
    Conserved Domains (2) summary
    pfam01108
    Location:26107
    Tissue_fac; Tissue factor
    pfam17037
    Location:287374
    CBP_BcsO; Cellulose biosynthesis protein BcsO

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    135455470..135482694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)