U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tmem39b transmembrane protein 39b [ Mus musculus (house mouse) ]

Gene ID: 230770, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Tmem39bprovided by MGI
Official Full Name
transmembrane protein 39bprovided by MGI
Primary source
MGI:MGI:2682939
See related
Ensembl:ENSMUSG00000053730 AllianceGenome:MGI:2682939
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6330509E05Rik
Summary
Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM39B (transmembrane protein 39B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 76.4), ovary adult (RPKM 22.1) and 26 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Tmem39b in Genome Data Viewer
Location:
4 D2.2; 4 63.31 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (129570145..129595850, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (129676352..129702167, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34305 Neighboring gene taxilin alpha Neighboring gene STARR-positive B cell enhancer ABC_E1283 Neighboring gene karyopherin subunit alpha 6 Neighboring gene STARR-positive B cell enhancer ABC_E7992 Neighboring gene microRNA 7016 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129378925-129379108 Neighboring gene KH domain containing, RNA binding, signal transduction associated 1 Neighboring gene STARR-seq mESC enhancer starr_11505 Neighboring gene STARR-seq mESC enhancer starr_11507 Neighboring gene STARR-positive B cell enhancer mm9_chr4:129438194-129438495 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129439040-129439227 Neighboring gene predicted gene 12967

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
  2. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
  3. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
  4. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  5. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC59407

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
transmembrane protein 39B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356378.1 → NP_001343307.1  transmembrane protein 39B isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL671759, BF465506, BM122099, CB248417, CV561000, DV656907
    Conserved Domains (1) summary
    pfam10271
    Location:3 → 363
    Tmp39; Putative transmembrane protein

  2. NM_199305.2 → NP_955009.1  transmembrane protein 39B isoform 1

    See identical proteins and their annotated locations for NP_955009.1

    Status: VALIDATED

    Source sequence(s)
    AL671759, BF465506, BM122099, CB248417, CV561000, DV656907
    Consensus CDS
    CCDS18702.1
    UniProtKB/Swiss-Prot
    Q810L4
    Related
    ENSMUSP00000099648.4, ENSMUST00000102588.10
    Conserved Domains (1) summary
    pfam10271
    Location:48 → 478
    Tmp39; Putative transmembrane protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    129570145..129595850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253455.2 → XP_030109315.1  transmembrane protein 39B isoform X2

    Conserved Domains (1) summary
    pfam10271
    Location:1 → 351
    Tmp39; Putative transmembrane protein

  2. XM_036164058.1 → XP_036019951.1  transmembrane protein 39B isoform X2

    Conserved Domains (1) summary
    pfam10271
    Location:1 → 351
    Tmp39; Putative transmembrane protein

  3. XM_036164055.1 → XP_036019948.1  transmembrane protein 39B isoform X1

    Conserved Domains (1) summary
    pfam10271
    Location:3 → 363
    Tmp39; Putative transmembrane protein

  4. XM_036164056.1 → XP_036019949.1  transmembrane protein 39B isoform X1

    Conserved Domains (1) summary
    pfam10271
    Location:3 → 363
    Tmp39; Putative transmembrane protein

  5. XM_006503046.3 → XP_006503109.1  transmembrane protein 39B isoform X2

    See identical proteins and their annotated locations for XP_006503109.1

    Conserved Domains (1) summary
    pfam10271
    Location:1 → 351
    Tmp39; Putative transmembrane protein

  6. XM_036164057.1 → XP_036019950.1  transmembrane protein 39B isoform X1

    Conserved Domains (1) summary
    pfam10271
    Location:3 → 363
    Tmp39; Putative transmembrane protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q810L4.1 GenPept UniProtKB/Swiss-Prot:Q810L4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous