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Fam167b family with sequence similarity 167, member B [ Mus musculus (house mouse) ]

Gene ID: 230766, updated on 5-Mar-2024

Summary

Official Symbol
Fam167bprovided by MGI
Official Full Name
family with sequence similarity 167, member Bprovided by MGI
Primary source
MGI:MGI:2668032
See related
Ensembl:ENSMUSG00000050493 AllianceGenome:MGI:2668032
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SEC
Summary
Orthologous to human FAM167B (family with sequence similarity 167 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in adrenal adult (RPKM 25.2), kidney adult (RPKM 8.6) and 13 other tissues See more
Orthologs
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Genomic context

Location:
4 D2.2; 4 63.26 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (129470608..129472373, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (129576815..129578580, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1039 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129234226-129234335 Neighboring gene CapStarr-seq enhancers MGSCv37_chr4:129235614-129235787 and MGSCv37_chr4:129235855-129236058 Neighboring gene lymphocyte protein tyrosine kinase Neighboring gene microRNA 8119 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129252379-129252729 Neighboring gene STARR-positive B cell enhancer ABC_E11717 Neighboring gene eukaryotic translation initiation factor 3, subunit I Neighboring gene transmembrane protein 234 Neighboring gene doublecortin domain containing 2b

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Clone Names

  • MGC29254

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182783.2NP_877584.2  protein FAM167B

    See identical proteins and their annotated locations for NP_877584.2

    Status: VALIDATED

    Source sequence(s)
    AK143928, BX517339, BY352072
    Consensus CDS
    CCDS51307.1
    UniProtKB/Swiss-Prot
    P17257, Q3UNY6
    Related
    ENSMUSP00000050531.9, ENSMUST00000052835.9
    Conserved Domains (1) summary
    pfam11652
    Location:89162
    DUF3259; Protein of unknown function (DUF3259)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    129470608..129472373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)