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Best4-ps bestrophin 4, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 230664, updated on 8-Feb-2024

Summary

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Official Symbol
Best4-psprovided by MGI
Official Full Name
bestrophin 4, pseudogeneprovided by MGI
Primary source
MGI:MGI:3663793
See related
Ensembl:ENSMUSG00000033872 AllianceGenome:MGI:3663793
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Vmd2l2p
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Genomic context

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Location:
4 D1; 4 53.41 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (117002454..117005482)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (117145257..117148285)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:116793139-116793326 Neighboring gene BTB domain containing 19 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:116797070-116797223 Neighboring gene dynein light chain Tctex-type 4 Neighboring gene polo like kinase 3 Neighboring gene STARR-positive B cell enhancer ABC_E2707 Neighboring gene STARR-positive B cell enhancer ABC_E7981 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide L pseudogene Neighboring gene STARR-seq mESC enhancer starr_11160 Neighboring gene predicted gene, 22980 Neighboring gene ribosomal protein S8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of the murine Vmd2 RFP-TM gene family. Krämer F, et al. Cytogenet Genome Res, 2004. PMID 15218265
  2. Three novel human VMD2-like genes are members of the evolutionary highly conserved RFP-TM family. Stöhr H, et al. Eur J Hum Genet, 2002 Apr. PMID 12032738
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • vitelliform macular dystrophy 2-like 2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005197.2 

    Range
    101..3129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    117002454..117005482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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