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Cstpp1 centriolar satellite-associated tubulin polyglutamylase complex regulator 1 [ Mus musculus (house mouse) ]

Gene ID: 228356, updated on 5-Mar-2024

Summary

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Official Symbol
Cstpp1provided by MGI
Official Full Name
centriolar satellite-associated tubulin polyglutamylase complex regulator 1provided by MGI
Primary source
MGI:MGI:1915079
See related
Ensembl:ENSMUSG00000040591 AllianceGenome:MGI:1915079
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110051M20Rik
Summary
Orthologous to human C11orf49 (chromosome 11 open reading frame 49). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 12.2), cerebellum adult (RPKM 11.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
2 E1; 2 50.63 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (91103585..91275059, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (91273240..91444714, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 31054 Neighboring gene STARR-positive B cell enhancer ABC_E3385 Neighboring gene protein kinase C and casein kinase substrate in neurons 3 Neighboring gene ADP-ribosylation factor GTPase activating protein 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:91148974-91149175 Neighboring gene STARR-seq mESC enhancer starr_05115 Neighboring gene predicted gene 13787 Neighboring gene STARR-positive B cell enhancer ABC_E9518 Neighboring gene low density lipoprotein receptor-related protein 4 Neighboring gene predicted gene 13770

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC4707, MGC40841

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables protein-macromolecule adaptor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in regulation of protein complex stability ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
centriolar satellite-associated tubulin polyglutamylase complex regulator 1
Names
UPF0705 protein C11orf49 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001311144.1 → NP_001298073.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform 1

    See identical proteins and their annotated locations for NP_001298073.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes isoform (1).
    Source sequence(s)
    AL732478, BC089006
    Consensus CDS
    CCDS79823.1
    UniProtKB/Swiss-Prot
    Q8BHR8
    Related
    ENSMUSP00000067770.8, ENSMUST00000064652.14

  2. NM_175123.5 → NP_780332.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform 2

    See identical proteins and their annotated locations for NP_780332.1

    Status: VALIDATED

    Source sequence(s)
    AL732478
    Consensus CDS
    CCDS16431.1
    UniProtKB/Swiss-Prot
    Q3TPK0, Q5HZI4, Q8BHR8
    UniProtKB/TrEMBL
    Q810Q1
    Related
    ENSMUSP00000099654.5, ENSMUST00000102594.11

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    91103585..91275059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161262.1 → XP_036017155.1  centriolar satellite-associated tubulin polyglutamylase complex regulator 1 isoform X1

    UniProtKB/TrEMBL
    A2AII6
    Related
    ENSMUSP00000092431.3, ENSMUST00000094835.9

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153797.1: Suppressed sequence

    Description
    NM_153797.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BHR8.1 GenPept UniProtKB/Swiss-Prot:Q8BHR8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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