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CRIPTOP4 CRIPTO pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 22815, updated on 10-Oct-2023

Summary

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Official Symbol
CRIPTOP4provided by HGNC
Official Full Name
CRIPTO pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:11704
See related
AllianceGenome:HGNC:11704
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CR-4; TDGF4; TDGF1P4; CRIPTO-4
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Genomic context

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Location:
6p25.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (3941234..3942007)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (3810868..3811641)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (3941468..3942241)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986558 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:3899874-3901073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3903895-3904396 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:3911966-3912163 Neighboring gene ribosomal protein S25 pseudogene 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3932846-3933346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3933347-3933847 Neighboring gene Sharpr-MPRA regulatory region 14796 Neighboring gene glutaredoxin 3 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:3990981-3991480 Neighboring gene uncharacterized LOC124901245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23895

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assignment of human teratocarcinoma derived growth factor (TDGF) sequences to chromosomes 2q37, 3q22, 6p25 and 19q13.1. Scognamiglio B, et al. Cytogenet Cell Genet, 1999. PMID 10393436

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • teratocarcinoma-derived growth factor 1 pseudogene 4
  • teratocarcinoma-derived growth factor 4 (pseudogene)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001243.5 

    Range
    101..874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    3941234..3942007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    3810868..3811641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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