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Ccdc148 coiled-coil domain containing 148 [ Mus musculus (house mouse) ]

Gene ID: 227933, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc148provided by MGI
Official Full Name
coiled-coil domain containing 148provided by MGI
Primary source
MGI:MGI:3039583
See related
Ensembl:ENSMUSG00000036641 AllianceGenome:MGI:3039583
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm38473; 5830402J09
Summary
Is expressed in cranial ganglion; dorsal root ganglion; neural retina; and pons mantle layer. Orthologous to human CCDC148 (coiled-coil domain containing 148). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
2; 2 C1.1
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (58701637..58991167, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (58821697..59160828, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_04543 Neighboring gene VISTA enhancer mm1599 Neighboring gene activin A receptor, type 1 Neighboring gene STARR-seq mESC enhancer starr_04549 Neighboring gene STARR-seq mESC enhancer starr_04550 Neighboring gene STARR-seq mESC enhancer starr_04553 Neighboring gene uridine phosphorylase 2 Neighboring gene STARR-seq mESC enhancer starr_04555 Neighboring gene STARR-seq mESC enhancer starr_04557 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_04559 Neighboring gene STARR-seq mESC enhancer starr_04561 Neighboring gene STARR-positive B cell enhancer mm9_chr2:58998596-58998897 Neighboring gene predicted gene, 54155 Neighboring gene STARR-seq mESC enhancer starr_04563 Neighboring gene plakophilin 4 Neighboring gene STARR-seq mESC enhancer starr_04569 Neighboring gene RIKEN cDNA 5330411J11 gene Neighboring gene STARR-seq mESC enhancer starr_04570 Neighboring gene STARR-seq mESC enhancer starr_04571 Neighboring gene STARR-seq mESC enhancer starr_04573 Neighboring gene predicted gene 13551

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Haplotype association mapping of acute lung injury in mice implicates activin a receptor, type 1. Leikauf GD, et al. Am J Respir Crit Care Med, 2011 Jun 1. PMID 21297076, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Ccdc148 is associated with acute lung injury
    Title: Haplotype association mapping of acute lung injury in mice implicates activin a receptor, type 1.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 148

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001178.2 → NP_001001178.1  coiled-coil domain-containing protein 148 isoform 2

    See identical proteins and their annotated locations for NP_001001178.1

    Status: VALIDATED

    Source sequence(s)
    BC062650, BY277763
    Consensus CDS
    CCDS50587.1
    UniProtKB/Swiss-Prot
    A2APN1, Q6P5U8, Q8CDB5
    Related
    ENSMUSP00000076871.6, ENSMUST00000077687.6
    Conserved Domains (1) summary
    pfam17380
    Location:288 → 410
    DUF5401; Family of unknown function (DUF5401)

  2. NM_001362393.1 → NP_001349322.1  coiled-coil domain-containing protein 148 isoform 1

    Status: VALIDATED

    Source sequence(s)
    BC062650, BY277763

  3. NM_001362394.1 → NP_001349323.1  coiled-coil domain-containing protein 148 isoform 3

    Status: VALIDATED

    Source sequence(s)
    BC062650, BY277763, CU210857

  4. NM_001372501.1 → NP_001359430.1  coiled-coil domain-containing protein 148 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL844163, AL929070, BX649232, CR626863, CU210857
    Consensus CDS
    CCDS89489.1
    UniProtKB/TrEMBL
    A0A2I3BPW3
    Related
    ENSMUSP00000153944.2, ENSMUST00000226455.2
    Conserved Domains (1) summary
    pfam17380
    Location:360 → 482
    DUF5401; Family of unknown function (DUF5401)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    58701637..58991167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030250138.2 → XP_030105998.1  coiled-coil domain-containing protein 148 isoform X4

    Conserved Domains (1) summary
    pfam17380
    Location:141 → 263
    DUF5401; Family of unknown function (DUF5401)

  2. XM_017317511.3 → XP_017173000.1  coiled-coil domain-containing protein 148 isoform X5

    Conserved Domains (1) summary
    pfam17380
    Location:68 → 187
    DUF5401; Family of unknown function (DUF5401)

  3. XM_017317507.3 → XP_017172996.1  coiled-coil domain-containing protein 148 isoform X1

    UniProtKB/Swiss-Prot
    A2APN1, Q6P5U8, Q8CDB5
    Conserved Domains (1) summary
    pfam17380
    Location:288 → 410
    DUF5401; Family of unknown function (DUF5401)

  4. XM_036160980.1 → XP_036016873.1  coiled-coil domain-containing protein 148 isoform X5

    Conserved Domains (1) summary
    pfam17380
    Location:68 → 187
    DUF5401; Family of unknown function (DUF5401)

  5. XM_017317510.3 → XP_017172999.1  coiled-coil domain-containing protein 148 isoform X2

  6. XM_036160971.1 → XP_036016864.1  coiled-coil domain-containing protein 148 isoform X3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177650.2: Suppressed sequence

    Description
    NM_177650.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6P5U8.1 GenPept UniProtKB/Swiss-Prot:Q6P5U8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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