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Gpr55 G protein-coupled receptor 55 [ Mus musculus (house mouse) ]

Gene ID: 227326, updated on 21-Apr-2024

Summary

Official Symbol
Gpr55provided by MGI
Official Full Name
G protein-coupled receptor 55provided by MGI
Primary source
MGI:MGI:2685064
See related
Ensembl:ENSMUSG00000049608 AllianceGenome:MGI:2685064
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CTFL; Gm218; Lpir1
Summary
Predicted to enable cannabinoid receptor activity. Predicted to be involved in several processes, including activation of phospholipase C activity; bone resorption; and positive regulation of intracellular signal transduction. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in cerebral cortex; forebrain; neural retina; and retina. Orthologous to human GPR55 (G protein-coupled receptor 55). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 1.4), small intestine adult (RPKM 1.0) and 15 other tissues See more
Orthologs
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Genomic context

Location:
1 C5; 1 43.94 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85860927..85924781, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85933221..85991583, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32302 Neighboring gene predicted gene, 51745 Neighboring gene RIKEN cDNA 4933407L21 gene Neighboring gene STARR-seq mESC enhancer starr_01557 Neighboring gene predicted gene, 41905 Neighboring gene STARR-positive B cell enhancer ABC_E5777 Neighboring gene predicted gene, 53569 Neighboring gene zinc finger protein 617 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (4)  1 citation
  • Endonuclease-mediated (4) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables cannabinoid receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables cannabinoid receptor activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
G-protein coupled receptor 55

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033290.3NP_001028462.2  G-protein coupled receptor 55

    See identical proteins and their annotated locations for NP_001028462.2

    Status: VALIDATED

    Source sequence(s)
    AC102506, AC107707
    Consensus CDS
    CCDS15115.1
    UniProtKB/Swiss-Prot
    Q3UJF0
    UniProtKB/TrEMBL
    Q14BV9
    Related
    ENSMUSP00000084196.5, ENSMUST00000086975.7
    Conserved Domains (2) summary
    cd14964
    Location:2047
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:20305
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    85860927..85924781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320337.3XP_017175826.1  G-protein coupled receptor 55 isoform X4

    UniProtKB/Swiss-Prot
    Q3UJF0
    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:2047
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:20305
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  2. XM_011247986.4XP_011246288.1  G-protein coupled receptor 55 isoform X1

    See identical proteins and their annotated locations for XP_011246288.1

    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:4875
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:48333
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  3. XM_006529459.5XP_006529522.1  G-protein coupled receptor 55 isoform X2

    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:3764
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:37322
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  4. XM_036164492.1XP_036020385.1  G-protein coupled receptor 55 isoform X4

    UniProtKB/Swiss-Prot
    Q3UJF0
    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:2047
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:20305
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  5. XM_030253716.2XP_030109576.1  G-protein coupled receptor 55 isoform X4

    UniProtKB/Swiss-Prot
    Q3UJF0
    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:2047
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:20305
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  6. XM_030253705.2XP_030109565.1  G-protein coupled receptor 55 isoform X1

    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:4875
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:48333
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  7. XM_030253706.2XP_030109566.1  G-protein coupled receptor 55 isoform X1

    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:4875
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:48333
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  8. XM_030253715.2XP_030109575.1  G-protein coupled receptor 55 isoform X3

    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:3259
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:32317
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  9. XM_030253712.2XP_030109572.1  G-protein coupled receptor 55 isoform X2

    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:3764
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:37322
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  10. XM_030253718.2XP_030109578.1  G-protein coupled receptor 55 isoform X4

    UniProtKB/Swiss-Prot
    Q3UJF0
    UniProtKB/TrEMBL
    Q14BV9
    Conserved Domains (2) summary
    cd14964
    Location:2047
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:20305
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily