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C130074G19Rik RIKEN cDNA C130074G19 gene [ Mus musculus (house mouse) ]

Gene ID: 226777, updated on 5-Mar-2024

Summary

Official Symbol
C130074G19Rikprovided by MGI
Official Full Name
RIKEN cDNA C130074G19 geneprovided by MGI
Primary source
MGI:MGI:2444831
See related
Ensembl:ENSMUSG00000039349 AllianceGenome:MGI:2444831
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in 9+0 non-motile cilium. Orthologous to human C1orf115 (chromosome 1 open reading frame 115). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in kidney adult (RPKM 42.1), subcutaneous fat pad adult (RPKM 34.0) and 22 other tissues See more
Orthologs
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Genomic context

Location:
1 H5; 1 89.22 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (184604123..184615233, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (184871926..184883036, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene mitochondrial amidoxime reducing component 2 Neighboring gene microRNA 1981 Neighboring gene STARR-positive B cell enhancer ABC_E10073 Neighboring gene STARR-seq mESC enhancer starr_03314 Neighboring gene STARR-positive B cell enhancer ABC_E11112 Neighboring gene predicted gene, 34451 Neighboring gene predicted gene, 34602 Neighboring gene nucleophosmin 1 pseudogene Neighboring gene MAP/microtubule affinity regulating kinase 1 Neighboring gene predicted gene, 39728

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in regulation of response to drug ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in 9+0 non-motile cilium ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
required for drug-induced death protein 1
Names
uncharacterized protein C1orf115 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178692.3NP_848807.1  required for drug-induced death protein 1

    See identical proteins and their annotated locations for NP_848807.1

    Status: VALIDATED

    Source sequence(s)
    AC131992, AK087640, BX636013, BY710149
    Consensus CDS
    CCDS35816.1
    UniProtKB/Swiss-Prot
    Q8BGN9
    Related
    ENSMUSP00000041904.6, ENSMUST00000048308.6
    Conserved Domains (1) summary
    pfam15828
    Location:62133
    DUF4710; Domain of unknown function (DUF4710)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    184604123..184615233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)