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Ubtd1 ubiquitin domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 226122, updated on 5-Mar-2024

Summary

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Official Symbol
Ubtd1provided by MGI
Official Full Name
ubiquitin domain containing 1provided by MGI
Primary source
MGI:MGI:2385092
See related
Ensembl:ENSMUSG00000025171 AllianceGenome:MGI:2385092
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human UBTD1 (ubiquitin domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 109.8), ovary adult (RPKM 17.0) and 15 other tissues See more
Orthologs
human all
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Genomic context

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See Ubtd1 in Genome Data Viewer
Location:
19 C3; 19 35.56 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (41970202..42023089)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (41981763..42034650)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3252 Neighboring gene zinc finger, DHHC domain containing 16 Neighboring gene MMS19 cytosolic iron-sulfur assembly component Neighboring gene STARR-positive B cell enhancer ABC_E1524 Neighboring gene predicted gene, 23113 Neighboring gene STARR-seq mESC enhancer starr_46168 Neighboring gene STARR-seq mESC enhancer starr_46171 Neighboring gene ankyrin repeat domain 2 Neighboring gene RIKEN cDNA 4933411K16 gene Neighboring gene 4-hydroxy-2-oxoglutarate aldolase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Differences in health status affect susceptibility and mapping of genetic loci for atherosclerosis (fatty streak) in inbred mice. Srivastava U, et al. Arterioscler Thromb Vasc Biol, 2012 Oct. PMID 22837474, Free PMC Article
  2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC28905

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ubiquitin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145500.3 → NP_663475.1  ubiquitin domain-containing protein 1

    See identical proteins and their annotated locations for NP_663475.1

    Status: VALIDATED

    Source sequence(s)
    AC133503, AC140193
    Consensus CDS
    CCDS29819.1
    UniProtKB/Swiss-Prot
    Q91WB7
    Related
    ENSMUSP00000026170.2, ENSMUST00000026170.3
    Conserved Domains (2) summary
    cd17120
    Location:151 → 219
    Ubl_UBTD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 1 (UBTD1)
    pfam16455
    Location:27 → 126
    UBD; Ubiquitin-binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    41970202..42023089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526997.1 → XP_006527060.1  ubiquitin domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    cd17120
    Location:110 → 178
    Ubl_UBTD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 1 (UBTD1)
    pfam16455
    Location:1 → 85
    UBD; Ubiquitin-binding domain

  2. XM_030250896.2 → XP_030106756.1  ubiquitin domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    cd17120
    Location:110 → 178
    Ubl_UBTD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 1 (UBTD1)
    pfam16455
    Location:1 → 85
    UBD; Ubiquitin-binding domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91WB7.1 GenPept UniProtKB/Swiss-Prot:Q91WB7

Gene LinkOut

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