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Gm9949 predicted gene 9949 [ Mus musculus (house mouse) ]

Gene ID: 225609, updated on 8-Feb-2024

Summary

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Official Symbol
Gm9949provided by MGI
Official Full Name
predicted gene 9949provided by MGI
Primary source
MGI:MGI:3647947
See related
Ensembl:ENSMUSG00000054589 AllianceGenome:MGI:3647947
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG225609
Expression
Broad expression in lung adult (RPKM 2.1), liver E18 (RPKM 1.2) and 21 other tissues See more
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Genomic context

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Location:
18 E1; 18 35.1 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (62313106..62339461)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (62179961..62206390)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:62334464-62334573 Neighboring gene STARR-seq mESC enhancer starr_44769 Neighboring gene predicted gene, 36003 Neighboring gene STARR-seq mESC enhancer starr_44770 Neighboring gene adrenergic receptor, beta 2 Neighboring gene predicted gene, 36124 Neighboring gene STARR-seq mESC enhancer starr_44772 Neighboring gene 5 hydroxytryptamine (serotonin) receptor 4 Neighboring gene predicted gene, 36316 Neighboring gene X-linked lymphocyte-regulated 5C pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC225609

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013754.2 → NP_001013776.1  uncharacterized protein LOC225609

    Status: VALIDATED

    Source sequence(s)
    AC124430, AK042188
    UniProtKB/TrEMBL
    Q8C9F4
    Related
    ENSMUST00000067743.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    62313106..62339461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161121.1 → XP_036017014.1  uncharacterized protein LOC225609 isoform X2

  2. XM_036161120.1 → XP_036017013.1  uncharacterized protein LOC225609 isoform X1

  3. XM_036161122.1 → XP_036017015.1  uncharacterized protein LOC225609 isoform X3

  4. XM_030250439.2 → XP_030106299.1  uncharacterized protein LOC225609 isoform X3

RNA

  1. XR_003952513.2 RNA Sequence

  2. XR_004939847.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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