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Ammecr1l AMME chromosomal region gene 1-like [ Mus musculus (house mouse) ]

Gene ID: 225339, updated on 5-Mar-2024

Summary

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Official Symbol
Ammecr1lprovided by MGI
Official Full Name
AMME chromosomal region gene 1-likeprovided by MGI
Primary source
MGI:MGI:2442711
See related
Ensembl:ENSMUSG00000041915 AllianceGenome:MGI:2442711
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5430429D03Rik; E230022H04Rik
Summary
Predicted to be active in nucleus. Is expressed in limb mesenchyme. Orthologous to human AMMECR1L (AMMECR1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 16.4), limb E14.5 (RPKM 8.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
18 B1; 18 17.84 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (31891457..31917136)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (31758504..31784083)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene Sin3A associated protein Neighboring gene predicted gene, 52327 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E8707 Neighboring gene STARR-positive B cell enhancer ABC_E3226 Neighboring gene predicted gene, 26533 Neighboring gene STARR-positive B cell enhancer mm9_chr18:31963552-31963852 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide D Neighboring gene STARR-positive B cell enhancer ABC_E10983 Neighboring gene WD repeat domain 33 Neighboring gene glutathione S-transferase, mu 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC32132

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
AMMECR1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242430.1 → NP_001229359.1  AMMECR1-like protein isoform 1

    See identical proteins and their annotated locations for NP_001229359.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC161511, AK133018
    UniProtKB/TrEMBL
    Q3V0N3
    Conserved Domains (1) summary
    pfam01871
    Location:183 → 353
    AMMECR1; AMMECR1

  2. NM_153515.4 → NP_705735.1  AMMECR1-like protein isoform 2

    See identical proteins and their annotated locations for NP_705735.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC161511, AK151060, BC056948
    Consensus CDS
    CCDS37753.1
    UniProtKB/Swiss-Prot
    Q8JZZ6
    Related
    ENSMUSP00000111475.3, ENSMUST00000115808.4
    Conserved Domains (1) summary
    pfam01871
    Location:109 → 279
    AMMECR1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    31891457..31917136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030250427.2 → XP_030106287.1  AMMECR1-like protein isoform X7

    Conserved Domains (1) summary
    pfam01871
    Location:110 → 274
    AMMECR1

  2. XM_030250426.2 → XP_030106286.1  AMMECR1-like protein isoform X6

    UniProtKB/TrEMBL
    A0A3Q4EHL9
    Related
    ENSMUSP00000157050.2, ENSMUST00000234191.2
    Conserved Domains (1) summary
    pfam01871
    Location:109 → 274
    AMMECR1

  3. XM_036161101.1 → XP_036016994.1  AMMECR1-like protein isoform X7

    Conserved Domains (1) summary
    pfam01871
    Location:110 → 274
    AMMECR1

  4. XM_006525843.5 → XP_006525906.1  AMMECR1-like protein isoform X4

    See identical proteins and their annotated locations for XP_006525906.1

    UniProtKB/Swiss-Prot
    Q8JZZ6
    Conserved Domains (1) summary
    pfam01871
    Location:109 → 279
    AMMECR1

  5. XM_030250429.2 → XP_030106289.1  AMMECR1-like protein isoform X8

    Conserved Domains (1) summary
    pfam01871
    Location:109 → 212
    AMMECR1

  6. XM_006525841.5 → XP_006525904.1  AMMECR1-like protein isoform X1

    Conserved Domains (1) summary
    pfam01871
    Location:183 → 348
    AMMECR1

  7. XM_006525844.4 → XP_006525907.1  AMMECR1-like protein isoform X5

    Conserved Domains (1) summary
    pfam01871
    Location:183 → 286
    AMMECR1

  8. XM_006525842.3 → XP_006525905.1  AMMECR1-like protein isoform X3

    Conserved Domains (1) summary
    pfam01871
    Location:183 → 348
    AMMECR1

  9. XM_036161100.1 → XP_036016993.1  AMMECR1-like protein isoform X2

    Conserved Domains (1) summary
    pfam01871
    Location:174 → 338
    AMMECR1

RNA

  1. XR_004939844.1 RNA Sequence

  2. XR_003952506.2 RNA Sequence

  3. XR_004939845.1 RNA Sequence

  4. XR_004939843.1 RNA Sequence

  5. XR_385986.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8JZZ6.1 GenPept UniProtKB/Swiss-Prot:Q8JZZ6

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