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AW554918 expressed sequence AW554918 [ Mus musculus (house mouse) ]

Gene ID: 225289, updated on 3-Apr-2024

Summary

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Official Symbol
AW554918provided by MGI
Official Full Name
expressed sequence AW554918provided by MGI
Primary source
MGI:MGI:2147376
See related
Ensembl:ENSMUSG00000033632 AllianceGenome:MGI:2147376
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kiaa1328; mKIAA1328; 4921538P22
Summary
Orthologous to human KIAA1328 (KIAA1328). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 4.2), CNS E14 (RPKM 1.5) and 23 other tissues See more
Orthologs
human all
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Genomic context

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Location:
18 A2; 18 13.74 cM
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (25301825..25600378)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (25168730..25467321)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr18:24835661-24835962 Neighboring gene molybdenum cofactor sulfurase Neighboring gene formin homology 2 domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_44073 Neighboring gene 39S ribosomal protein L42, mitochondrial pseudogene Neighboring gene STARR-seq mESC enhancer starr_44075 Neighboring gene tubulin polyglutamylase complex subunit 2 Neighboring gene STARR-seq mESC enhancer starr_44077 Neighboring gene STARR-seq mESC enhancer starr_44078 Neighboring gene STARR-seq mESC enhancer starr_44080 Neighboring gene predicted gene, 32825 Neighboring gene CUGBP, Elav-like family member 4 Neighboring gene STARR-positive B cell enhancer ABC_E3225 Neighboring gene predicted gene 3227

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein hinderin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033532.4 → NP_001028704.2  protein hinderin isoform 1

    See identical proteins and their annotated locations for NP_001028704.2

    Status: VALIDATED

    Source sequence(s)
    AC124355, AC125104, AC144938
    UniProtKB/Swiss-Prot
    Q3TJX2, Q571M8, Q6NZK5
    UniProtKB/TrEMBL
    E9QAK8
    Related
    ENSMUSP00000095248.4, ENSMUST00000097643.10
    Conserved Domains (1) summary
    pfam15369
    Location:92 → 414
    KIAA1328; uncharacterized protein KIAA1328

  2. NM_001405457.1 → NP_001392386.1  protein hinderin isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC124355, AC125104, AC144938
    UniProtKB/TrEMBL
    E9QPX6
    Related
    ENSMUSP00000046227.8, ENSMUST00000036619.14

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    25301825..25600378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317877.3 → XP_017173366.2  protein hinderin isoform X4

    UniProtKB/TrEMBL
    E9QAK8
    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  2. XM_030250422.2 → XP_030106282.1  protein hinderin isoform X7

    UniProtKB/TrEMBL
    E9QAK8
    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  3. XM_036161093.1 → XP_036016986.1  protein hinderin isoform X1

    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  4. XM_036161094.1 → XP_036016987.1  protein hinderin isoform X2

    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  5. XM_017317880.3 → XP_017173369.2  protein hinderin isoform X8

    UniProtKB/TrEMBL
    E9QAK8
    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  6. XM_036161096.1 → XP_036016989.1  protein hinderin isoform X9

    UniProtKB/TrEMBL
    E9QAK8
    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  7. XM_017317878.3 → XP_017173367.2  protein hinderin isoform X6

    UniProtKB/TrEMBL
    E9QAK8
    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  8. XM_017317882.3 → XP_017173371.2  protein hinderin isoform X11

    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  9. XM_017317883.3 → XP_017173372.2  protein hinderin isoform X12

    Conserved Domains (1) summary
    pfam15369
    Location:173 → 495
    KIAA1328; Uncharacterized protein KIAA1328

  10. XM_036161097.1 → XP_036016990.1  protein hinderin isoform X10

    Conserved Domains (1) summary
    pfam15369
    Location:28 → 350
    KIAA1328; Uncharacterized protein KIAA1328

  11. XM_036161099.1 → XP_036016992.1  protein hinderin isoform X14

    Conserved Domains (1) summary
    pfam15369
    Location:28 → 350
    KIAA1328; Uncharacterized protein KIAA1328

  12. XM_036161095.1 → XP_036016988.1  protein hinderin isoform X3

    Conserved Domains (1) summary
    pfam15369
    Location:83 → 405
    KIAA1328; Uncharacterized protein KIAA1328

  13. XM_036161098.1 → XP_036016991.1  protein hinderin isoform X13

    Conserved Domains (1) summary
    pfam15369
    Location:1 → 211
    KIAA1328; Uncharacterized protein KIAA1328

RNA

  1. XR_003952505.2 RNA Sequence

  2. XR_001782355.3 RNA Sequence

  3. XR_001782354.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NZK5.2 GenPept UniProtKB/Swiss-Prot:Q6NZK5

Gene LinkOut

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