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Ankrd29 ankyrin repeat domain 29 [ Mus musculus (house mouse) ]

Gene ID: 225187, updated on 5-Mar-2024

Summary

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Official Symbol
Ankrd29provided by MGI
Official Full Name
ankyrin repeat domain 29provided by MGI
Primary source
MGI:MGI:2687055
See related
Ensembl:ENSMUSG00000057766 AllianceGenome:MGI:2687055
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm95; G630054C21; G630054C21Rik
Summary
Orthologous to human ANKRD29 (ankyrin repeat domain 29). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cerebellum adult (RPKM 4.1), frontal lobe adult (RPKM 4.0) and 16 other tissues See more
Orthologs
human all
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Genomic context

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Location:
18 A1; 18 6.15 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (12385414..12439067, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (12252357..12306013, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 19293 Neighboring gene regulator of MON1-CCZ1 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene STARR-positive B cell enhancer ABC_E2504 Neighboring gene STARR-seq mESC enhancer starr_43833 Neighboring gene ecotropic viral integration site 5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_43835 Neighboring gene laminin, alpha 3 Neighboring gene predicted gene, 36232 Neighboring gene STARR-positive B cell enhancer ABC_E8704 Neighboring gene predicted gene 29200

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Evidence for complex multigenic inheritance of radiation AML susceptibility in mice revealed using a surrogate phenotypic assay. Darakhshan F, et al. Carcinogenesis, 2006 Feb. PMID 16093251
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190371.1 → NP_001177300.1  ankyrin repeat domain-containing protein 29 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AK090336, AK162301, BY091192, BY479478
    Consensus CDS
    CCDS50221.1
    UniProtKB/TrEMBL
    D3YTU5, D3YVV3
    Related
    ENSMUSP00000114028.2, ENSMUST00000118525.9
    Conserved Domains (3) summary
    cd00204
    Location:40 → 165
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:50 → 141
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:78 → 109
    ANK; ANK repeat [structural motif]

  2. NM_001360803.1 → NP_001347732.1  ankyrin repeat domain-containing protein 29 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks alternate in-frame exons in the 5' coding region, compared to variant 1. It encodes isoform 2 which has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AC102248
    Conserved Domains (3) summary
    cd00204
    Location:7 → 128
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:8 → 39
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:112 → 203
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    12385414..12439067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317867.3 → XP_017173356.1  ankyrin repeat domain-containing protein 29 isoform X1

    Conserved Domains (3) summary
    sd00045
    Location:150 → 181
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:122 → 213
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:219 → 270
    Ank_4; Ankyrin repeats (many copies)

  2. XM_017317869.3 → XP_017173358.1  ankyrin repeat domain-containing protein 29 isoform X3

    Conserved Domains (3) summary
    sd00045
    Location:112 → 143
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:117 → 207
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:81 → 132
    Ank_4; Ankyrin repeats (many copies)

  3. XM_017317871.3 → XP_017173360.1  ankyrin repeat domain-containing protein 29 isoform X5

    UniProtKB/TrEMBL
    A0A3Q4EGJ3
    Related
    ENSMUSP00000156996.2, ENSMUST00000234183.2
    Conserved Domains (3) summary
    sd00045
    Location:108 → 139
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:80 → 171
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:177 → 228
    Ank_4; Ankyrin repeats (many copies)

  4. XM_017317870.3 → XP_017173359.1  ankyrin repeat domain-containing protein 29 isoform X4

    Conserved Domains (3) summary
    sd00045
    Location:145 → 176
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:117 → 208
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:214 → 265
    Ank_4; Ankyrin repeats (many copies)

  5. XM_017317868.3 → XP_017173357.1  ankyrin repeat domain-containing protein 29 isoform X2

    Conserved Domains (3) summary
    sd00045
    Location:150 → 181
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:122 → 213
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:219 → 270
    Ank_4; Ankyrin repeats (many copies)

  6. XM_036161089.1 → XP_036016982.1  ankyrin repeat domain-containing protein 29 isoform X6

    Conserved Domains (3) summary
    sd00045
    Location:108 → 139
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:177 → 228
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:80 → 171
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_036161090.1 → XP_036016983.1  ankyrin repeat domain-containing protein 29 isoform X7

    Conserved Domains (2) summary
    sd00045
    Location:75 → 106
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:80 → 170
    Ank_2; Ankyrin repeats (3 copies)

  8. XM_017317873.3 → XP_017173362.1  ankyrin repeat domain-containing protein 29 isoform X8

    Conserved Domains (3) summary
    COG0666
    Location:79 → 182
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:76 → 110
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:122 → 170
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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