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Gxylt1 glucoside xylosyltransferase 1 [ Mus musculus (house mouse) ]

Gene ID: 223827, updated on 5-Mar-2024

Summary

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Official Symbol
Gxylt1provided by MGI
Official Full Name
glucoside xylosyltransferase 1provided by MGI
Primary source
MGI:MGI:2684933
See related
Ensembl:ENSMUSG00000036197 AllianceGenome:MGI:2684933
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm87; Glt8d3; Gm1228
Summary
Predicted to enable UDP-xylosyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GXYLT1 (glucoside xylosyltransferase 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 6.5), placenta adult (RPKM 5.6) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Gxylt1 in Genome Data Viewer
Location:
15 E3; 15 47.34 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (93137611..93173060, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (93239730..93275336, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_39521 Neighboring gene predicted gene, 38535 Neighboring gene STARR-seq mESC enhancer starr_39522 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E945 Neighboring gene YY1 associated factor 2 Neighboring gene predicted gene, 52193 Neighboring gene predicted gene, 26371

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables UDP-xylosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables UDP-xylosyltransferase activity ISO
Inferred from Sequence Orthology
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in O-glycan processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in O-glycan processing ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glucoside xylosyltransferase 1
Names
glycosyltransferase 8 domain containing 3
glycosyltransferase 8 domain-containing protein 3
NP_001028447.1
NP_001333714.1
NP_001343935.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033275.5 → NP_001028447.1  glucoside xylosyltransferase 1 isoform 1

    See identical proteins and their annotated locations for NP_001028447.1

    Status: VALIDATED

    Source sequence(s)
    AC127360
    Consensus CDS
    CCDS27764.1
    UniProtKB/Swiss-Prot
    Q3UHH8
    Related
    ENSMUSP00000047281.7, ENSMUST00000049484.13
    Conserved Domains (2) summary
    cd06430
    Location:80 → 352
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function
    COG1442
    Location:164 → 309
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

  2. NM_001346785.1 → NP_001333714.1  glucoside xylosyltransferase 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC127360
    Consensus CDS
    CCDS84189.1
    UniProtKB/TrEMBL
    D3Z6W7
    Related
    ENSMUSP00000081947.4, ENSMUST00000057896.5

  3. NM_001357006.1 → NP_001343935.1  glucoside xylosyltransferase 1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC127360
    Consensus CDS
    CCDS88828.1
    UniProtKB/Swiss-Prot
    B7ZWC3, Q3UHH8
    Related
    ENSMUSP00000155854.2, ENSMUST00000230063.2
    Conserved Domains (1) summary
    cd06430
    Location:80 → 380
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    93137611..93173060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UHH8.2 GenPept UniProtKB/Swiss-Prot:Q3UHH8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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