U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tceal9 transcription elongation factor A like 9 [ Mus musculus (house mouse) ]

Gene ID: 22381, updated on 5-Mar-2024

Summary

Official Symbol
Tceal9provided by MGI
Official Full Name
transcription elongation factor A like 9provided by MGI
Primary source
MGI:MGI:109567
See related
Ensembl:ENSMUSG00000042712 AllianceGenome:MGI:109567
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Wbp5
Summary
Enables WW domain binding activity. Predicted to be active in nucleus. Orthologous to human TCEAL9 (transcription elongation factor A like 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in placenta adult (RPKM 194.5), CNS E11.5 (RPKM 130.6) and 12 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
X F1; X 57.53 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (135145829..135147888)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (136245080..136247139)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene transcription elongation factor A (SII)-like 7 Neighboring gene predicted gene, 39535 Neighboring gene brain expressed X-linked 3 Neighboring gene nuclear encoded rRNA 5S 12

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General protein information

Preferred Names
transcription elongation factor A protein-like 9
Names
TCEA-like protein 9
WBP-5
WW domain binding protein 5
schlafen 8-interacting protein
transcription elongation factor S-II protein-like 9

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011712.2NP_035842.1  transcription elongation factor A protein-like 9

    See identical proteins and their annotated locations for NP_035842.1

    Status: VALIDATED

    Source sequence(s)
    AL671493, BU511227
    Consensus CDS
    CCDS30418.1
    UniProtKB/Swiss-Prot
    A3KG99, O08549, Q9DD24
    Related
    ENSMUSP00000047474.5, ENSMUST00000048687.11
    Conserved Domains (1) summary
    pfam04538
    Location:44102
    BEX; Brain expressed X-linked like family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    135145829..135147888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)