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RPL23P8 ribosomal protein L23 pseudogene 8 [ Homo sapiens (human) ]

Gene ID: 222901, updated on 10-Oct-2023

Summary

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Official Symbol
RPL23P8provided by HGNC
Official Full Name
ribosomal protein L23 pseudogene 8provided by HGNC
Primary source
HGNC:HGNC:36225
See related
Ensembl:ENSG00000219451 AllianceGenome:HGNC:36225
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23_4_790
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Genomic context

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Location:
7p21.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (20827298..20827820)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (20963349..20963871)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (20866917..20867439)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:20681108-20682307 Neighboring gene NANOG hESC enhancer GRCh37_chr7:20693236-20693793 Neighboring gene ATP binding cassette subfamily B member 5 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:20815756-20816338 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:20816339-20816919 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:20822883-20823543 Neighboring gene VISTA enhancer hs844 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:20835446-20836154 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17993 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17994 Neighboring gene VISTA enhancer hs1019 Neighboring gene NANOG hESC enhancer GRCh37_chr7:20855921-20856533 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:20866537-20867736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:20874484-20874984 Neighboring gene Sp8 transcription factor Neighboring gene long intergenic non-protein coding RNA 1162 Neighboring gene ribosomal protein S26 pseudogene 30 Neighboring gene VISTA enhancer hs1007 Neighboring gene VISTA enhancer hs110 Neighboring gene VISTA enhancer hs1148 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:21050446-21051645 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:21069658-21070388 Neighboring gene VISTA enhancer hs1226 Neighboring gene VISTA enhancer hs701 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_98226 Neighboring gene RNA, 7SL, cytoplasmic 542, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Eeles RA, et al. Nat Genet, 2013 Apr. PMID 23535732, Free PMC Article
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026673.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005251
    Related
    ENST00000405810.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    20827298..20827820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    20963349..20963871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases