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Cd70 CD70 antigen [ Mus musculus (house mouse) ]

Gene ID: 21948, updated on 7-Apr-2024

Summary

Official Symbol
Cd70provided by MGI
Official Full Name
CD70 antigenprovided by MGI
Primary source
MGI:MGI:1195273
See related
Ensembl:ENSMUSG00000019489 AllianceGenome:MGI:1195273
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cd27l; CD27LG; Tnfsf7; Tnlg8a
Summary
Predicted to enable cytokine activity and protease binding activity. Predicted to be involved in several processes, including B cell proliferation; T cell mediated immunity; and extrinsic apoptotic signaling pathway. Predicted to be located in extracellular space and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in Meckel's cartilage; hip; and skeleton. Human ortholog(s) of this gene implicated in lymphoproliferative syndrome. Orthologous to human CD70 (CD70 molecule). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in thymus adult (RPKM 2.9), cerebellum adult (RPKM 2.7) and 5 other tissues See more
Orthologs
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Genomic context

Location:
17 D; 17 29.69 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (57452997..57456777, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (57145997..57149777, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene 11110 Neighboring gene predicted gene, 46589 Neighboring gene tumor necrosis factor (ligand) superfamily, member 9 Neighboring gene STARR-seq mESC enhancer starr_42920 Neighboring gene predicted gene, 33566 Neighboring gene tumor necrosis factor (ligand) superfamily, member 14 Neighboring gene complement component 3 Neighboring gene microRNA 6978

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cytokine activity ISO
Inferred from Sequence Orthology
more info
 
enables protease binding ISO
Inferred from Sequence Orthology
more info
 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in B cell mediated immunity ISO
Inferred from Sequence Orthology
more info
 
involved_in B cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in T cell mediated immunity ISO
Inferred from Sequence Orthology
more info
 
involved_in extrinsic apoptotic signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
CD70 antigen
Names
CD27 ligand
CD27-L
Ki-24 antigen
tumor necrosis factor ligand 8a
tumor necrosis factor ligand superfamily member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011617.2NP_035747.1  CD70 antigen

    See identical proteins and their annotated locations for NP_035747.1

    Status: PROVISIONAL

    Source sequence(s)
    CT025692
    Consensus CDS
    CCDS28927.1
    UniProtKB/Swiss-Prot
    O55237
    UniProtKB/TrEMBL
    Q05A52
    Related
    ENSMUSP00000019633.8, ENSMUST00000019633.8
    Conserved Domains (1) summary
    cd00184
    Location:60191
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    57452997..57456777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)