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Rd3l retinal degeneration 3-like [ Mus musculus (house mouse) ]

Gene ID: 217874, updated on 5-Mar-2024

Summary

Official Symbol
Rd3lprovided by MGI
Official Full Name
retinal degeneration 3-likeprovided by MGI
Primary source
MGI:MGI:2675860
See related
Ensembl:ENSMUSG00000091402 AllianceGenome:MGI:2675860
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A930011N13
Summary
Orthologous to human RD3L (RD3 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
12 F1; 12 61.14 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (111945625..111947751, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (111979191..111981317, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36757 Neighboring gene STARR-positive B cell enhancer ABC_E8504 Neighboring gene ATP synthase membrane subunit j Neighboring gene tudor domain containing 9 Neighboring gene predicted gene, 46381 Neighboring gene microRNA 3073a Neighboring gene microRNA 3073b Neighboring gene asparaginase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127685.1NP_001121157.1  protein RD3-like

    See identical proteins and their annotated locations for NP_001121157.1

    Status: PROVISIONAL

    Source sequence(s)
    BC147034
    Consensus CDS
    CCDS49185.1
    UniProtKB/TrEMBL
    B2RV38
    Related
    ENSMUSP00000140410.2, ENSMUST00000190536.2
    Conserved Domains (1) summary
    pfam14473
    Location:16129
    RD3; RD3 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    111945625..111947751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515764.2XP_006515827.1  protein RD3-like isoform X1

    See identical proteins and their annotated locations for XP_006515827.1

    UniProtKB/TrEMBL
    B2RV38
    Related
    ENSMUSP00000140454.2, ENSMUST00000189759.7
    Conserved Domains (1) summary
    pfam14473
    Location:16129
    RD3; RD3 protein